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Items: 11

1.

Making sense of high-throughput protein-protein interaction data.

Scholtens D, Gentleman R.

Stat Appl Genet Mol Biol. 2004;3:Article39. Epub 2005 Jan 3.

PMID:
16646819
2.

Vertex similarity in networks.

Leicht EA, Holme P, Newman ME.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Feb;73(2 Pt 2):026120. Epub 2006 Feb 17.

PMID:
16605411
3.

Reactome: a knowledgebase of biological pathways.

Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath GR, Wu GR, Matthews L, Lewis S, Birney E, Stein L.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32.

4.

Bioconductor: open software development for computational biology and bioinformatics.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J.

Genome Biol. 2004;5(10):R80. Epub 2004 Sep 15.

5.

The MeSH translation maintenance system: structure, interface design, and implementation.

Nelson SJ, Schopen M, Savage AG, Schulman JL, Arluk N.

Stud Health Technol Inform. 2004;107(Pt 1):67-9.

PMID:
15360776
6.

A graph-theoretic approach to testing associations between disparate sources of functional genomics data.

Balasubramanian R, LaFramboise T, Scholtens D, Gentleman R.

Bioinformatics. 2004 Dec 12;20(18):3353-62. Epub 2004 Jul 15.

PMID:
15256415
7.

Minimal cut sets in biochemical reaction networks.

Klamt S, Gilles ED.

Bioinformatics. 2004 Jan 22;20(2):226-34.

PMID:
14734314
8.

Pathways database system: an integrated system for biological pathways.

Krishnamurthy L, Nadeau J, Ozsoyoglu G, Ozsoyoglu M, Schaeffer G, Tasan M, Xu W.

Bioinformatics. 2003 May 22;19(8):930-7.

PMID:
12761054
9.

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.

Ge H, Liu Z, Church GM, Vidal M.

Nat Genet. 2001 Dec;29(4):482-6.

PMID:
11694880
10.

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G.

Nat Genet. 2000 May;25(1):25-9. No abstract available.

11.

A genome-wide transcriptional analysis of the mitotic cell cycle.

Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW.

Mol Cell. 1998 Jul;2(1):65-73.

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