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Items: 1 to 20 of 34

1.

Stochastic relaxation, gibbs distributions, and the bayesian restoration of images.

Geman S, Geman D.

IEEE Trans Pattern Anal Mach Intell. 1984 Jun;6(6):721-41.

PMID:
22499653
2.

Deciphering principles of transcription regulation in eukaryotic genomes.

Nguyen DH, D'haeseleer P.

Mol Syst Biol. 2006;2:2006.0012. Epub 2006 Apr 18.

3.

Inferring transcriptional modules from ChIP-chip, motif and microarray data.

Lemmens K, Dhollander T, De Bie T, Monsieurs P, Engelen K, Smets B, Winderickx J, De Moor B, Marchal K.

Genome Biol. 2006;7(5):R37. Epub 2006 May 5.

4.

A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays.

McLachlan GJ, Bean RW, Jones LB.

Bioinformatics. 2006 Jul 1;22(13):1608-15. Epub 2006 Apr 21.

PMID:
16632494
5.

Microarray data analysis: from disarray to consolidation and consensus.

Allison DB, Cui X, Page GP, Sabripour M.

Nat Rev Genet. 2006 Jan;7(1):55-65. Review. Erratum in: Nat Rev Genet. 2006 May;7(5):406.

PMID:
16369572
6.
7.

Defining the mammalian CArGome.

Sun Q, Chen G, Streb JW, Long X, Yang Y, Stoeckert CJ Jr, Miano JM.

Genome Res. 2006 Feb;16(2):197-207. Epub 2005 Dec 19.

9.

Inferring yeast cell cycle regulators and interactions using transcription factor activities.

Yang YL, Suen J, Brynildsen MP, Galbraith SJ, Liao JC.

BMC Genomics. 2005 Jun 10;6:90.

10.
11.

Finding regulatory modules through large-scale gene-expression data analysis.

Kloster M, Tang C, Wingreen NS.

Bioinformatics. 2005 Apr 1;21(7):1172-9. Epub 2004 Oct 28.

PMID:
15513996
13.

Orthogonal analysis of C/EBPbeta targets in vivo during liver proliferation.

Friedman JR, Larris B, Le PP, Peiris TH, Arsenlis A, Schug J, Tobias JW, Kaestner KH, Greenbaum LE.

Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12986-91. Epub 2004 Aug 18.

14.

LGL: creating a map of protein function with an algorithm for visualizing very large biological networks.

Adai AT, Date SV, Wieland S, Marcotte EM.

J Mol Biol. 2004 Jun 25;340(1):179-90.

PMID:
15184029
15.
16.

Predicting gene expression from sequence.

Beer MA, Tavazoie S.

Cell. 2004 Apr 16;117(2):185-98.

17.

Network component analysis: reconstruction of regulatory signals in biological systems.

Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15522-7. Epub 2003 Dec 12.

18.

Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Banerjee N, Zhang MQ.

Nucleic Acids Res. 2003 Dec 1;31(23):7024-31.

19.

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T.

Genome Res. 2003 Nov;13(11):2498-504.

20.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

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