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Items: 1 to 20 of 73

1.

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

PMID:
16554755
2.

Structural systems biology: modelling protein interactions.

Aloy P, Russell RB.

Nat Rev Mol Cell Biol. 2006 Mar;7(3):188-97. Review.

PMID:
16496021
3.
4.

Finding biologically relevant protein domain interactions: conserved binding mode analysis.

Shoemaker BA, Panchenko AR, Bryant SH.

Protein Sci. 2006 Feb;15(2):352-61. Epub 2005 Dec 29.

5.

Systematic discovery of new recognition peptides mediating protein interaction networks.

Neduva V, Linding R, Su-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB.

PLoS Biol. 2005 Dec;3(12):e405. Epub 2005 Nov 15.

6.

Survey of the geometric association of domain-domain interfaces.

Kim WK, Ison JC.

Proteins. 2005 Dec 1;61(4):1075-88.

PMID:
16247798
7.

Prediction of protein-protein interactions using random decision forest framework.

Chen XW, Liu M.

Bioinformatics. 2005 Dec 15;21(24):4394-400. Epub 2005 Oct 18.

PMID:
16234318
8.

Inferring protein domain interactions from databases of interacting proteins.

Riley R, Lee C, Sabatti C, Eisenberg D.

Genome Biol. 2005;6(10):R89. Epub 2005 Sep 19.

9.

Decomposing protein networks into domain-domain interactions.

Albrecht M, Huthmacher C, Tosatto SC, Lengauer T.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii220-1.

PMID:
16204107
10.

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

Pazos F, Ranea JA, Juan D, Sternberg MJ.

J Mol Biol. 2005 Sep 30;352(4):1002-15.

PMID:
16139301
11.

A protein domain interaction interface database: InterPare.

Gong S, Park C, Choi H, Ko J, Jang I, Lee J, Bolser DM, Oh D, Kim DS, Bhak J.

BMC Bioinformatics. 2005 Aug 25;6:207.

12.

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.

Sato T, Yamanishi Y, Kanehisa M, Toh H.

Bioinformatics. 2005 Sep 1;21(17):3482-9. Epub 2005 Jun 30.

PMID:
15994190
13.

Predicting protein-protein interaction by searching evolutionary tree automorphism space.

Jothi R, Kann MG, Przytycka TM.

Bioinformatics. 2005 Jun;21 Suppl 1:i241-50.

14.
15.

Interaction network containing conserved and essential protein complexes in Escherichia coli.

Butland G, Peregrín-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A.

Nature. 2005 Feb 3;433(7025):531-7.

PMID:
15690043
16.

Conserved patterns of protein interaction in multiple species.

Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P, Sittler T, Karp RM, Ideker T.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1974-9. Epub 2005 Feb 1.

17.

Conservation of orientation and sequence in protein domain--domain interactions.

Littler SJ, Hubbard SJ.

J Mol Biol. 2005 Feb 4;345(5):1265-79. Epub 2004 Dec 16.

PMID:
15644220
18.

A domain interaction map based on phylogenetic profiling.

Pagel P, Wong P, Frishman D.

J Mol Biol. 2004 Dec 10;344(5):1331-46.

PMID:
15561146
19.

Statistical analysis of domains in interacting protein pairs.

Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA.

Bioinformatics. 2005 Apr 1;21(7):993-1001. Epub 2004 Oct 27.

PMID:
15509600
20.

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.

Finn RD, Marshall M, Bateman A.

Bioinformatics. 2005 Feb 1;21(3):410-2. Epub 2004 Sep 7.

PMID:
15353450

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