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Items: 16

1.

Accurate prediction of the functional significance of single nucleotide polymorphisms and mutations in the ABCA1 gene.

Brunham LR, Singaraja RR, Pape TD, Kejariwal A, Thomas PD, Hayden MR.

PLoS Genet. 2005 Dec;1(6):e83. Epub 2005 Dec 30.

2.

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks.

Maere S, Heymans K, Kuiper M.

Bioinformatics. 2005 Aug 15;21(16):3448-9. Epub 2005 Jun 21.

PMID:
15972284
3.

Distinct proteomic profiles of amphetamine self-administration transitional states.

Freeman WM, Brebner K, Amara SG, Reed MS, Pohl J, Phillips AG.

Pharmacogenomics J. 2005;5(3):203-14.

PMID:
15852055
4.

The PANTHER database of protein families, subfamilies, functions and pathways.

Mi H, Lazareva-Ulitsky B, Loo R, Kejariwal A, Vandergriff J, Rabkin S, Guo N, Muruganujan A, Doremieux O, Campbell MJ, Kitano H, Thomas PD.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D284-8.

5.
6.

Genomic analysis of essentiality within protein networks.

Yu H, Greenbaum D, Xin Lu H, Zhu X, Gerstein M.

Trends Genet. 2004 Jun;20(6):227-31. Review. Erratum in: Trends Genet. 2005 Jan;21(1):36.

PMID:
15145574
7.

Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.

Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, Todd MA, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, Adams MD, Cargill M.

Science. 2003 Dec 12;302(5652):1960-3.

8.

PANTHER: a library of protein families and subfamilies indexed by function.

Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, Daverman R, Diemer K, Muruganujan A, Narechania A.

Genome Res. 2003 Sep;13(9):2129-41.

9.

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.

Mootha VK, Lepage P, Miller K, Bunkenborg J, Reich M, Hjerrild M, Delmonte T, Villeneuve A, Sladek R, Xu F, Mitchell GA, Morin C, Mann M, Hudson TJ, Robinson B, Rioux JD, Lander ES.

Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):605-10. Epub 2003 Jan 14.

10.

The FlyBase database of the Drosophila genome projects and community literature.

FlyBase Consortium.

Nucleic Acids Res. 2002 Jan 1;30(1):106-8.

11.

Transcriptional regulation and function during the human cell cycle.

Cho RJ, Huang M, Campbell MJ, Dong H, Steinmetz L, Sapinoso L, Hampton G, Elledge SJ, Davis RW, Lockhart DJ.

Nat Genet. 2001 Jan;27(1):48-54.

PMID:
11137997
12.

RefSeq and LocusLink: NCBI gene-centered resources.

Pruitt KD, Maglott DR.

Nucleic Acids Res. 2001 Jan 1;29(1):137-40.

13.

Transcription, genomes, function.

Cho RJ, Campbell MJ.

Trends Genet. 2000 Sep;16(9):409-15. Review.

PMID:
10973070
14.

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G.

Nat Genet. 2000 May;25(1):25-9. No abstract available.

15.

Hidden Markov models.

Eddy SR.

Curr Opin Struct Biol. 1996 Jun;6(3):361-5. Review.

PMID:
8804822
16.

Profile analysis: detection of distantly related proteins.

Gribskov M, McLachlan AD, Eisenberg D.

Proc Natl Acad Sci U S A. 1987 Jul;84(13):4355-8.

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