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Items: 14


From genomics to chemical genomics: new developments in KEGG.

Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7.


CLU: a new algorithm for EST clustering.

Ptitsyn A, Hide W.

BMC Bioinformatics. 2005 Jul 15;6 Suppl 2:S3.


The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.


Efficient filtering methods for clustering cDNAs with spliced sequence alignment.

Shibuya T, Kashima H, Konagaya A.

Bioinformatics. 2004 Jan 1;20(1):29-39.


Database resources of the National Center for Biotechnology.

Wheeler DL, Church DM, Federhen S, Lash AE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA, Wagner L.

Nucleic Acids Res. 2003 Jan 1;31(1):28-33.


Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.

Konno H, Fukunishi Y, Shibata K, Itoh M, Carninci P, Sugahara Y, Hayashizaki Y.

Genome Res. 2001 Feb;11(2):281-9.


STACK: Sequence Tag Alignment and Consensus Knowledgebase.

Christoffels A, van Gelder A, Greyling G, Miller R, Hide T, Hide W.

Nucleic Acids Res. 2001 Jan 1;29(1):234-8.


Repbase update: a database and an electronic journal of repetitive elements.

Jurka J.

Trends Genet. 2000 Sep;16(9):418-20. No abstract available.


Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.

Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W Jr, Zago MA, Bordin S, Costa FF, Goldman GH, Carvalho AF, Matsukuma A, Baia GS, Simpson DH, Brunstein A, de Oliveira PS, Bucher P, Jongeneel CV, O'Hare MJ, Soares F, Brentani RR, Reis LF, de Souza SJ, Simpson AJ.

Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3491-6.


CAP3: A DNA sequence assembly program.

Huang X, Madan A.

Genome Res. 1999 Sep;9(9):868-77.


Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Ewing B, Hillier L, Wendl MC, Green P.

Genome Res. 1998 Mar;8(3):175-85.


Generation and analysis of 280,000 human expressed sequence tags.

Hillier LD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, Dietrich N, DuBuque T, Favello A, Gish W, Hawkins M, Hultman M, Kucaba T, Lacy M, Le M, Le N, Mardis E, Moore B, Morris M, Parsons J, Prange C, Rifkin L, Rohlfing T, Schellenberg K, Bento Soares M, Tan F, Thierry-Meg J, Trevaskis E, Underwood K, Wohldman P, Waterston R, Wilson R, Marra M.

Genome Res. 1996 Sep;6(9):807-28.


Complementary DNA sequencing: expressed sequence tags and human genome project.

Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, et al.

Science. 1991 Jun 21;252(5013):1651-6.


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