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Items: 1 to 20 of 39

1.

Comparative analysis of gene sets in the Gene Ontology space under the multiple hypothesis testing framework.

Zhong S, Tian L, Li C, Storch KF, Wong WH.

Proc IEEE Comput Syst Bioinform Conf. 2004:425-35.

PMID:
16448035
2.

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

Yamashita R, Suzuki Y, Wakaguri H, Tsuritani K, Nakai K, Sugano S.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D86-9.

3.

Genome-scale profiling of histone H3.3 replacement patterns.

Mito Y, Henikoff JG, Henikoff S.

Nat Genet. 2005 Oct;37(10):1090-7. Epub 2005 Sep 11.

PMID:
16155569
4.

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.

Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Pääbo S.

Science. 2005 Sep 16;309(5742):1850-4. Epub 2005 Sep 1.

5.

Genome-scale identification of nucleosome positions in S. cerevisiae.

Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ.

Science. 2005 Jul 22;309(5734):626-30. Epub 2005 Jun 16.

6.

The expression profile of purified Drosophila germline stem cells.

Kai T, Williams D, Spradling AC.

Dev Biol. 2005 Jul 15;283(2):486-502.

7.

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast.

Tanay A, Regev A, Shamir R.

Proc Natl Acad Sci U S A. 2005 May 17;102(20):7203-8. Epub 2005 May 9.

8.

Whole-genome analysis reveals a strong positional bias of conserved dMyc-dependent E-boxes.

Hulf T, Bellosta P, Furrer M, Steiger D, Svensson D, Barbour A, Gallant P.

Mol Cell Biol. 2005 May;25(9):3401-10.

9.

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.

Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M.

Nature. 2005 Mar 17;434(7031):338-45. Epub 2005 Feb 27.

10.
11.

Genomic maps and comparative analysis of histone modifications in human and mouse.

Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ 3rd, Gingeras TR, Schreiber SL, Lander ES.

Cell. 2005 Jan 28;120(2):169-81.

12.

DNA methylation and chromatin structure: the puzzling CpG islands.

Caiafa P, Zampieri M.

J Cell Biochem. 2005 Feb 1;94(2):257-65. Review.

PMID:
15546139
13.
14.

Bioconductor: open software development for computational biology and bioinformatics.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J.

Genome Biol. 2004;5(10):R80. Epub 2004 Sep 15.

15.

Testis-specific TAF homologs collaborate to control a tissue-specific transcription program.

Hiller M, Chen X, Pringle MJ, Suchorolski M, Sancak Y, Viswanathan S, Bolival B, Lin TY, Marino S, Fuller MT.

Development. 2004 Nov;131(21):5297-308. Epub 2004 Sep 29.

16.

Core promoter sequences contribute to ovo-B regulation in the Drosophila melanogaster germline.

Bielinska B, Lü J, Sturgill D, Oliver B.

Genetics. 2005 Jan;169(1):161-72. Epub 2004 Sep 15.

17.

Clustering of DNA sequences in human promoters.

FitzGerald PC, Shlyakhtenko A, Mir AA, Vinson C.

Genome Res. 2004 Aug;14(8):1562-74. Epub 2004 Jul 15.

18.

The MTE, a new core promoter element for transcription by RNA polymerase II.

Lim CY, Santoso B, Boulay T, Dong E, Ohler U, Kadonaga JT.

Genes Dev. 2004 Jul 1;18(13):1606-17.

19.

A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults.

Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lü J, Doctolero M, Vainer M, Chan C, Malley J, Eastman S, Oliver B.

Genome Biol. 2004;5(6):R40. Epub 2004 Jun 1.

20.

WebLogo: a sequence logo generator.

Crooks GE, Hon G, Chandonia JM, Brenner SE.

Genome Res. 2004 Jun;14(6):1188-90.

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