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Items: 1 to 20 of 53

1.

Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops.

Chiapello H, Bourgait I, Sourivong F, Heuclin G, Gendrault-Jacquemard A, Petit MA, El Karoui M.

BMC Bioinformatics. 2005 Jul 12;6:171.

2.
3.

REP code: defining bacterial identity in extragenic space.

Tobes R, Ramos JL.

Environ Microbiol. 2005 Feb;7(2):225-8.

PMID:
15658989
4.

Characterization of ermB gene transposition by Tn1545 and Tn917 in macrolide-resistant Streptococcus pneumoniae isolates.

Okitsu N, Kaieda S, Yano H, Nakano R, Hosaka Y, Okamoto R, Kobayashi T, Inoue M.

J Clin Microbiol. 2005 Jan;43(1):168-73.

5.

Analysis of the N-terminal DNA binding domain of the IS30 transposase.

Nagy Z, Szabó M, Chandler M, Olasz F.

Mol Microbiol. 2004 Oct;54(2):478-88.

7.

The helix-turn-helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding.

Rousseau P, Gueguen E, Duval-Valentin G, Chandler M.

Nucleic Acids Res. 2004 Feb 23;32(4):1335-44. Print 2004.

9.

The Pfam protein families database.

Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41.

11.

Transposases are responsible for the target specificity of IS1397 and ISKpn1 for two different types of palindromic units (PUs).

Wilde C, Escartin F, Kokeguchi S, Latour-Lambert P, Lectard A, Clément JM.

Nucleic Acids Res. 2003 Aug 1;31(15):4345-53.

12.

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Düsterhöft A, Tümmler B, Fraser CM.

Environ Microbiol. 2002 Dec;4(12):799-808. Erratum in: Environ Microbiol. 2003 Jul;5(7):630.

PMID:
12534463
14.

Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers.

Schneider D, Duperchy E, Depeyrot J, Coursange E, Lenski R, Blot M.

BMC Microbiol. 2002 Jul 9;2:18.

15.

Protein coding palindromes are a unique but recurrent feature in Rickettsia.

Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM.

Genome Res. 2002 May;12(5):808-16.

16.

Species-specific repetitive extragenic palindromic (REP) sequences in Pseudomonas putida.

Aranda-Olmedo I, Tobes R, Manzanera M, Ramos JL, Marqués S.

Nucleic Acids Res. 2002 Apr 15;30(8):1826-33.

17.

Transcription attenuation associated with bacterial repetitive extragenic BIME elements.

Espéli O, Moulin L, Boccard F.

J Mol Biol. 2001 Nov 30;314(3):375-86.

PMID:
11846552
18.

The composite genome of the legume symbiont Sinorhizobium meliloti.

Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J.

Science. 2001 Jul 27;293(5530):668-72.

20.

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