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Items: 1 to 20 of 31

1.

The many faces of sequence alignment.

Batzoglou S.

Brief Bioinform. 2005 Mar;6(1):6-22. Review.

PMID:
15826353
2.

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.

Wei C, Lamesch P, Arumugam M, Rosenberg J, Hu P, Vidal M, Brent MR.

Genome Res. 2005 Apr;15(4):577-82.

3.

Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Sönnichsen B, Koski LB, Walsh A, Marschall P, Neumann B, Brehm M, Alleaume AM, Artelt J, Bettencourt P, Cassin E, Hewitson M, Holz C, Khan M, Lazik S, Martin C, Nitzsche B, Ruer M, Stamford J, Winzi M, Heinkel R, Röder M, Finell J, Häntsch H, Jones SJ, Jones M, Piano F, Gunsalus KC, Oegema K, Gönczy P, Coulson A, Hyman AA, Echeverri CJ.

Nature. 2005 Mar 24;434(7032):462-9.

PMID:
15791247
4.

Using ontologies to describe mouse phenotypes.

Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D.

Genome Biol. 2005;6(1):R8. Epub 2004 Dec 20.

5.

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.

Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D383-9.

6.

A first version of the Caenorhabditis elegans Promoterome.

Dupuy D, Li QR, Deplancke B, Boxem M, Hao T, Lamesch P, Sequerra R, Bosak S, Doucette-Stamm L, Hope IA, Hill DE, Walhout AJ, Vidal M.

Genome Res. 2004 Oct;14(10B):2169-75.

7.

Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Rual JF, Ceron J, Koreth J, Hao T, Nicot AS, Hirozane-Kishikawa T, Vandenhaute J, Orkin SH, Hill DE, van den Heuvel S, Vidal M.

Genome Res. 2004 Oct;14(10B):2162-8.

8.

WormBase as an integrated platform for the C. elegans ORFeome.

Chen N, Lawson D, Bradnam K, Harris TW, Stein LD.

Genome Res. 2004 Oct;14(10B):2155-61.

9.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

10.

A probabilistic model of 3' end formation in Caenorhabditis elegans.

Hajarnavis A, Korf I, Durbin R.

Nucleic Acids Res. 2004 Jun 24;32(11):3392-9. Print 2004.

11.

A phylogeny of caenorhabditis reveals frequent loss of introns during nematode evolution.

Cho S, Jin SW, Cohen A, Ellis RE.

Genome Res. 2004 Jul;14(7):1207-20.

12.

Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss.

Kiontke K, Gavin NP, Raynes Y, Roehrig C, Piano F, Fitch DH.

Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9003-8. Epub 2004 Jun 7.

13.

Genome annotation by high-throughput 5' RNA end determination.

Hwang BJ, Müller HM, Sternberg PW.

Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1650-5. Epub 2004 Feb 2.

14.

EnsMart: a generic system for fast and flexible access to biological data.

Kasprzyk A, Keefe D, Smedley D, London D, Spooner W, Melsopp C, Hammond M, Rocca-Serra P, Cox T, Birney E.

Genome Res. 2004 Jan;14(1):160-9.

15.

A map of the interactome network of the metazoan C. elegans.

Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M.

Science. 2004 Jan 23;303(5657):540-3. Epub 2004 Jan 2.

16.

WormBase: a multi-species resource for nematode biology and genomics.

Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7.

17.

The Pfam protein families database.

Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41.

18.

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.

Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH.

PLoS Biol. 2003 Nov;1(2):E45. Epub 2003 Nov 17.

19.

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.

Camon E, Magrane M, Barrell D, Binns D, Fleischmann W, Kersey P, Mulder N, Oinn T, Maslen J, Cox A, Apweiler R.

Genome Res. 2003 Apr;13(4):662-72. Epub 2003 Mar 12.

20.

Caenorhabditis elegans operons: form and function.

Blumenthal T, Gleason KS.

Nat Rev Genet. 2003 Feb;4(2):112-20. Review. No abstract available.

PMID:
12560808

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