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Items: 1 to 20 of 36

1.

Identification and analysis of alternative splicing events conserved in human and mouse.

Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB.

Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2850-5. Epub 2005 Feb 11.

2.

The Vertebrate Genome Annotation (Vega) database.

Ashurst JL, Chen CK, Gilbert JG, Jekosch K, Keenan S, Meidl P, Searle SM, Stalker J, Storey R, Trevanion S, Wilming L, Hubbard T.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D459-65.

3.

InterPro, progress and status in 2005.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, Gough J, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McDowall J, Mitchell A, Nikolskaya AN, Orchard S, Pagni M, Ponting CP, Quevillon E, Selengut J, Sigrist CJ, Silventoinen V, Studholme DJ, Vaughan R, Wu CH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D201-5.

4.

A computational and experimental approach toward a priori identification of alternatively spliced exons.

Philipps DL, Park JW, Graveley BR.

RNA. 2004 Dec;10(12):1838-44. Epub 2004 Nov 3.

5.

How did alternative splicing evolve?

Ast G.

Nat Rev Genet. 2004 Oct;5(10):773-82. Review.

PMID:
15510168
6.

The ENCODE (ENCyclopedia Of DNA Elements) Project.

ENCODE Project Consortium.

Science. 2004 Oct 22;306(5696):636-40.

PMID:
15499007
7.

Variation in alternative splicing across human tissues.

Yeo G, Holste D, Kreiman G, Burge CB.

Genome Biol. 2004;5(10):R74. Epub 2004 Sep 13.

8.

The DNA sequence and comparative analysis of human chromosome 5.

Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, Altherr M, Bajorek E, Black S, Branscomb E, Caoile C, Challacombe JF, Chan YM, Denys M, Detter JC, Escobar J, Flowers D, Fotopulos D, Glavina T, Gomez M, Gonzales E, Goodstein D, Grigoriev I, Groza M, Hammon N, Hawkins T, Haydu L, Israni S, Jett J, Kadner K, Kimball H, Kobayashi A, Lopez F, Lou Y, Martinez D, Medina C, Morgan J, Nandkeshwar R, Noonan JP, Pitluck S, Pollard M, Predki P, Priest J, Ramirez L, Retterer J, Rodriguez A, Rogers S, Salamov A, Salazar A, Thayer N, Tice H, Tsai M, Ustaszewska A, Vo N, Wheeler J, Wu K, Yang J, Dickson M, Cheng JF, Eichler EE, Olsen A, Pennacchio LA, Rokhsar DS, Richardson P, Lucas SM, Myers RM, Rubin EM.

Nature. 2004 Sep 16;431(7006):268-74.

PMID:
15372022
9.

A non-EST-based method for exon-skipping prediction.

Sorek R, Shemesh R, Cohen Y, Basechess O, Ast G, Shamir R.

Genome Res. 2004 Aug;14(8):1617-23.

10.

Ultraconserved elements in the human genome.

Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D.

Science. 2004 May 28;304(5675):1321-5. Epub 2004 May 6.

11.

Detection and evaluation of intron retention events in the human transcriptome.

Galante PA, Sakabe NJ, Kirschbaum-Slager N, de Souza SJ.

RNA. 2004 May;10(5):757-65.

12.

Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat.

Dewey C, Wu JQ, Cawley S, Alexandersson M, Gibbs R, Pachter L.

Genome Res. 2004 Apr;14(4):661-4.

13.

Multiple-sequence functional annotation and the generalized hidden Markov phylogeny.

McAuliffe JD, Pachter L, Jordan MI.

Bioinformatics. 2004 Aug 12;20(12):1850-60. Epub 2004 Feb 26.

PMID:
14988105
14.

Ensembl 2004.

Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D468-70.

15.

ASD: the Alternative Splicing Database.

Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D64-9.

16.

HMM sampling and applications to gene finding and alternative splicing.

Cawley SL, Pachter L.

Bioinformatics. 2003 Oct;19 Suppl 2:ii36-41.

PMID:
14534169
17.

Single molecule profiling of alternative pre-mRNA splicing.

Zhu J, Shendure J, Mitra RD, Church GM.

Science. 2003 Aug 8;301(5634):836-8.

18.

Low conservation of alternative splicing patterns in the human and mouse genomes.

Nurtdinov RN, Artamonova II, Mironov AA, Gelfand MS.

Hum Mol Genet. 2003 Jun 1;12(11):1313-20.

PMID:
12761046
20.

Mechanisms of alternative pre-messenger RNA splicing.

Black DL.

Annu Rev Biochem. 2003;72:291-336. Epub 2003 Feb 27. Review.

PMID:
12626338

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