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Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification.

Paez JG, Lin M, Beroukhim R, Lee JC, Zhao X, Richter DJ, Gabriel S, Herman P, Sasaki H, Altshuler D, Li C, Meyerson M, Sellers WR.

Nucleic Acids Res. 2004 May 18;32(9):e71.


An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays.

Zhao X, Li C, Paez JG, Chin K, Jänne PA, Chen TH, Girard L, Minna J, Christiani D, Leo C, Gray JW, Sellers WR, Meyerson M.

Cancer Res. 2004 May 1;64(9):3060-71.


High-resolution analysis of DNA copy number using oligonucleotide microarrays.

Bignell GR, Huang J, Greshock J, Watt S, Butler A, West S, Grigorova M, Jones KW, Wei W, Stratton MR, Futreal PA, Weber B, Shapero MH, Wooster R.

Genome Res. 2004 Feb;14(2):287-95.


1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis.

Greshock J, Naylor TL, Margolin A, Diskin S, Cleaver SH, Futreal PA, deJong PJ, Zhao S, Liebman M, Weber BL.

Genome Res. 2004 Jan;14(1):179-87. Epub 2003 Dec 12.


Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation.

Lucito R, Healy J, Alexander J, Reiner A, Esposito D, Chi M, Rodgers L, Brady A, Sebat J, Troge J, West JA, Rostan S, Nguyen KC, Powers S, Ye KQ, Olshen A, Venkatraman E, Norton L, Wigler M.

Genome Res. 2003 Oct;13(10):2291-305. Epub 2003 Sep 15.


Large-scale genotyping of complex DNA.

Kennedy GC, Matsuzaki H, Dong S, Liu WM, Huang J, Liu G, Su X, Cao M, Chen W, Zhang J, Liu W, Yang G, Di X, Ryder T, He Z, Surti U, Phillips MS, Boyce-Jacino MT, Fodor SP, Jones KW.

Nat Biotechnol. 2003 Oct;21(10):1233-7. Epub 2003 Sep 7.


Genomic microarrays in human genetic disease and cancer.

Albertson DG, Pinkel D.

Hum Mol Genet. 2003 Oct 15;12 Spec No 2:R145-52. Epub 2003 Aug 5. Review.


Molecular classification of familial non-BRCA1/BRCA2 breast cancer.

Hedenfalk I, Ringner M, Ben-Dor A, Yakhini Z, Chen Y, Chebil G, Ach R, Loman N, Olsson H, Meltzer P, Borg A, Trent J.

Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2532-7. Epub 2003 Feb 27.


Microarray-based copy number and expression profiling in dedifferentiated and pleomorphic liposarcoma.

Fritz B, Schubert F, Wrobel G, Schwaenen C, Wessendorf S, Nessling M, Korz C, Rieker RJ, Montgomery K, Kucherlapati R, Mechtersheimer G, Eils R, Joos S, Lichter P.

Cancer Res. 2002 Jun 1;62(11):2993-8.


Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas.

Hodgson G, Hager JH, Volik S, Hariono S, Wernick M, Moore D, Nowak N, Albertson DG, Pinkel D, Collins C, Hanahan D, Gray JW.

Nat Genet. 2001 Dec;29(4):459-64. Erratum in: Nat Genet 2001 Dec;29(4):491.


Assembly of microarrays for genome-wide measurement of DNA copy number.

Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG.

Nat Genet. 2001 Nov;29(3):263-4.


Extensive characterization of genetic alterations in a series of human colorectal cancer cell lines.

Gayet J, Zhou XP, Duval A, Rolland S, Hoang JM, Cottu P, Hamelin R.

Oncogene. 2001 Aug 16;20(36):5025-32.


Ectopic sequences from truncated HMGIC in liposarcomas are derived from various amplified chromosomal regions.

Meza-Zepeda LA, Berner JM, Henriksen J, South AP, Pedeutour F, Dahlberg AB, Godager LH, Nizetic D, Forus A, Myklebost O.

Genes Chromosomes Cancer. 2001 Jul;31(3):264-73.


Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.

Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ, Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, Meyer MR, Kobayashi S, Davis C, Dai H, He YD, Stephaniants SB, Cavet G, Walker WL, West A, Coffey E, Shoemaker DD, Stoughton R, Blanchard AP, Friend SH, Linsley PS.

Nat Biotechnol. 2001 Apr;19(4):342-7.


Loss-of-heterozygosity analysis of small-cell lung carcinomas using single-nucleotide polymorphism arrays.

Lindblad-Toh K, Tanenbaum DM, Daly MJ, Winchester E, Lui WO, Villapakkam A, Stanton SE, Larsson C, Hudson TJ, Johnson BE, Lander ES, Meyerson M.

Nat Biotechnol. 2000 Sep;18(9):1001-5.


A 700-kb physical map of a region of 16q23.2 homozygously deleted in multiple cancers and spanning the common fragile site FRA16D.

Paige AJ, Taylor KJ, Stewart A, Sgouros JG, Gabra H, Sellar GC, Smyth JF, Porteous DJ, Watson JE.

Cancer Res. 2000 Mar 15;60(6):1690-7.


Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO.

Nat Genet. 1999 Sep;23(1):41-6.


An 18q- syndrome breakpoint resides between the duplicated serpins SCCA1 and SCCA2 and arises via a cryptic rearrangement with satellite III DNA.

Katz SG, Schneider SS, Bartuski A, Trask BJ, Massa H, Overhauser J, Lalande M, Lansdorp PM, Silverman GA.

Hum Mol Genet. 1999 Jan;8(1):87-92.


High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Dairkee SH, Ljung BM, Gray JW, Albertson DG.

Nat Genet. 1998 Oct;20(2):207-11.


Expression monitoring by hybridization to high-density oligonucleotide arrays.

Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, Mittmann M, Wang C, Kobayashi M, Horton H, Brown EL.

Nat Biotechnol. 1996 Dec;14(13):1675-80.


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