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Items: 1 to 20 of 22

1.

Comparative analyses of multi-species sequences from targeted genomic regions.

Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, Karolchik D, Bruen TC, Bevan R, Cutler DJ, Schwartz S, Elnitski L, Idol JR, Prasad AB, Lee-Lin SQ, Maduro VV, Summers TJ, Portnoy ME, Dietrich NL, Akhter N, Ayele K, Benjamin B, Cariaga K, Brinkley CP, Brooks SY, Granite S, Guan X, Gupta J, Haghighi P, Ho SL, Huang MC, Karlins E, Laric PL, Legaspi R, Lim MJ, Maduro QL, Masiello CA, Mastrian SD, McCloskey JC, Pearson R, Stantripop S, Tiongson EE, Tran JT, Tsurgeon C, Vogt JL, Walker MA, Wetherby KD, Wiggins LS, Young AC, Zhang LH, Osoegawa K, Zhu B, Zhao B, Shu CL, De Jong PJ, Lawrence CE, Smit AF, Chakravarti A, Haussler D, Green P, Miller W, Green ED.

Nature. 2003 Aug 14;424(6950):788-93.

PMID:
12917688
2.

A vision for the future of genomics research.

Collins FS, Green ED, Guttmacher AE, Guyer MS; US National Human Genome Research Institute.

Nature. 2003 Apr 24;422(6934):835-47. Epub 2003 Apr 14. No abstract available.

PMID:
12695777
3.

Comparative genomics: genome-wide analysis in metazoan eukaryotes.

Ureta-Vidal A, Ettwiller L, Birney E.

Nat Rev Genet. 2003 Apr;4(4):251-62. Review.

PMID:
12671656
4.

Initial sequencing and comparative analysis of the mouse genome.

Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigó R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES.

Nature. 2002 Dec 5;420(6915):520-62.

PMID:
12466850
5.

BLAT--the BLAST-like alignment tool.

Kent WJ.

Genome Res. 2002 Apr;12(4):656-64.

6.

Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis.

Weinmann AS, Yan PS, Oberley MJ, Huang TH, Farnham PJ.

Genes Dev. 2002 Jan 15;16(2):235-44.

7.
8.

SSAHA: a fast search method for large DNA databases.

Ning Z, Cox AJ, Mullikin JC.

Genome Res. 2001 Oct;11(10):1725-9.

9.

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.

Lieb JD, Liu X, Botstein D, Brown PO.

Nat Genet. 2001 Aug;28(4):327-34. Erratum in: Nat Genet 2001 Sep;29(1):100.

PMID:
11455386
10.

Genomic strategies to identify mammalian regulatory sequences.

Pennacchio LA, Rubin EM.

Nat Rev Genet. 2001 Feb;2(2):100-9. Review.

PMID:
11253049
11.

Genome-wide location and function of DNA binding proteins.

Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA.

Science. 2000 Dec 22;290(5500):2306-9.

12.

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, Roth R, George D, Eletr S, Albrecht G, Vermaas E, Williams SR, Moon K, Burcham T, Pallas M, DuBridge RB, Kirchner J, Fearon K, Mao J, Corcoran K.

Nat Biotechnol. 2000 Jun;18(6):630-4. Erratum in: Nat Biotechnol 2000 Oct;18(10):1021.

PMID:
10835600
13.

Primer3 on the WWW for general users and for biologist programmers.

Rozen S, Skaletsky H.

Methods Mol Biol. 2000;132:365-86. No abstract available.

PMID:
10547847
14.

The complete sequences of the galago and rabbit beta-globin locus control regions: extended sequence and functional conservation outside the cores of DNase hypersensitive sites.

Slightom JL, Bock JH, Tagle DA, Gumucio DL, Goodman M, Stojanovic N, Jackson J, Miller W, Hardison R.

Genomics. 1997 Jan 1;39(1):90-4.

PMID:
9027490
15.

TRANSFAC: a database on transcription factors and their DNA binding sites.

Wingender E, Dietze P, Karas H, Knüppel R.

Nucleic Acids Res. 1996 Jan 1;24(1):238-41.

16.

Serial analysis of gene expression.

Velculescu VE, Zhang L, Vogelstein B, Kinzler KW.

Science. 1995 Oct 20;270(5235):484-7.

PMID:
7570003
18.

The DNase I sensitive domain of the chicken lysozyme gene spans 24 kb.

Jantzen K, Fritton HP, Igo-Kemenes T.

Nucleic Acids Res. 1986 Aug 11;14(15):6085-99.

19.

A review of estimating animal abundance.

Seber GA.

Biometrics. 1986 Jun;42(2):267-92. Review.

PMID:
3527287
20.

Overall changes in chromatin sensitivity to DNase I during differentiation.

Szabó G Jr, Damjanovich S, Sümegi J, Klein G.

Exp Cell Res. 1987 Mar;169(1):158-68.

PMID:
3469102

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