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Items: 1 to 20 of 26

1.

The Protein Data Bank and structural genomics.

Westbrook J, Feng Z, Chen L, Yang H, Berman HM.

Nucleic Acids Res. 2003 Jan 1;31(1):489-91.

2.

MMDB: Entrez's 3D-structure database.

Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH.

Nucleic Acids Res. 2003 Jan 1;31(1):474-7.

3.

CDD: a curated Entrez database of conserved domain alignments.

Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH.

Nucleic Acids Res. 2003 Jan 1;31(1):383-7.

4.

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M.

Nucleic Acids Res. 2003 Jan 1;31(1):365-70.

5.

The Protein Information Resource.

Wu CH, Yeh LS, Huang H, Arminski L, Castro-Alvear J, Chen Y, Hu Z, Kourtesis P, Ledley RS, Suzek BE, Vinayaka CR, Zhang J, Barker WC.

Nucleic Acids Res. 2003 Jan 1;31(1):345-7.

6.

NCBI Reference Sequence project: update and current status.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2003 Jan 1;31(1):34-7.

7.

GenBank.

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.

Nucleic Acids Res. 2003 Jan 1;31(1):23-7.

8.

CDART: protein homology by domain architecture.

Geer LY, Domrachev M, Lipman DJ, Bryant SH.

Genome Res. 2002 Oct;12(10):1619-23.

9.

PatternHunter: faster and more sensitive homology search.

Ma B, Tromp J, Li M.

Bioinformatics. 2002 Mar;18(3):440-5.

PMID:
11934743
10.

The Pfam protein families database.

Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL.

Nucleic Acids Res. 2002 Jan 1;30(1):276-80.

11.

Recent improvements to the SMART domain-based sequence annotation resource.

Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P.

Nucleic Acids Res. 2002 Jan 1;30(1):242-4.

12.

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Edgar R, Domrachev M, Lash AE.

Nucleic Acids Res. 2002 Jan 1;30(1):207-10.

13.

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF.

Nucleic Acids Res. 2001 Jul 15;29(14):2994-3005. Review.

14.

dbSNP: the NCBI database of genetic variation.

Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.

Nucleic Acids Res. 2001 Jan 1;29(1):308-11.

15.

SAGEmap: a public gene expression resource.

Lash AE, Tolstoshev CM, Wagner L, Schuler GD, Strausberg RL, Riggins GJ, Altschul SF.

Genome Res. 2000 Jul;10(7):1051-60.

16.

A greedy algorithm for aligning DNA sequences.

Zhang Z, Schwartz S, Wagner L, Miller W.

J Comput Biol. 2000 Feb-Apr;7(1-2):203-14.

PMID:
10890397
17.

Cn3D: sequence and structure views for Entrez.

Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH.

Trends Biochem Sci. 2000 Jun;25(6):300-2. No abstract available.

PMID:
10838572
18.

The COG database: a tool for genome-scale analysis of protein functions and evolution.

Tatusov RL, Galperin MY, Natale DA, Koonin EV.

Nucleic Acids Res. 2000 Jan 1;28(1):33-6.

19.

Complete genomes in WWW Entrez: data representation and analysis.

Tatusova TA, Karsch-Mizrachi I, Ostell JA.

Bioinformatics. 1999 Jul-Aug;15(7-8):536-43.

PMID:
10487861
20.

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences.

Tatusova TA, Madden TL.

FEMS Microbiol Lett. 1999 May 15;174(2):247-50. Erratum in: FEMS Microbiol Lett 1999 Aug 1;177(1):187-8.

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