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Items: 1 to 20 of 22

1.

Elevated μs-ms timescale backbone dynamics in the transition state analog form of arginine kinase.

Davulcu O, Peng Y, Brüschweiler R, Skalicky JJ, Chapman MS.

J Struct Biol. 2017 Dec;200(3):258-266. doi: 10.1016/j.jsb.2017.05.002. Epub 2017 May 8.

PMID:
28495594
2.

The Michaelis Complex of Arginine Kinase Samples the Transition State at a Frequency That Matches the Catalytic Rate.

Peng Y, Hansen AL, Bruschweiler-Li L, Davulcu O, Skalicky JJ, Chapman MS, Brüschweiler R.

J Am Chem Soc. 2017 Apr 5;139(13):4846-4853. doi: 10.1021/jacs.7b00236. Epub 2017 Mar 27.

3.

The Sampling of Conformational Dynamics in Ambient-Temperature Crystal Structures of Arginine Kinase.

Godsey MH, Davulcu O, Nix JC, Skalicky JJ, Brüschweiler RP, Chapman MS.

Structure. 2016 Oct 4;24(10):1658-1667. doi: 10.1016/j.str.2016.07.013. Epub 2016 Sep 1.

4.

From deep TLS validation to ensembles of atomic models built from elemental motions.

Urzhumtsev A, Afonine PV, Van Benschoten AH, Fraser JS, Adams PD.

Acta Crystallogr D Biol Crystallogr. 2015 Aug;71(Pt 8):1668-83. doi: 10.1107/S1399004715011426. Epub 2015 Jul 28. Erratum in: Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1073-5.

5.

TLS from fundamentals to practice.

Urzhumtsev A, Afonine PV, Adams PD.

Crystallogr Rev. 2013 Jul 1;19(4):230-270.

6.

Common hydrogen bond interactions in diverse phosphoryl transfer active sites.

Summerton JC, Martin GM, Evanseck JD, Chapman MS.

PLoS One. 2014 Sep 19;9(9):e108310. doi: 10.1371/journal.pone.0108310. eCollection 2014.

7.

Crystal structures of carbamate kinase from Giardia lamblia bound with citric acid and AMP-PNP.

Lim K, Kulakova L, Galkin A, Herzberg O.

PLoS One. 2013 May 20;8(5):e64004. doi: 10.1371/journal.pone.0064004. Print 2013.

8.

Hyperconjugation-mediated solvent effects in phosphoanhydride bonds.

Summerton JC, Evanseck JD, Chapman MS.

J Phys Chem A. 2012 Oct 18;116(41):10209-17. doi: 10.1021/jp306607k. Epub 2012 Oct 9.

9.

Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.

Clark SA, Davulcu O, Chapman MS.

Biochem Biophys Res Commun. 2012 Oct 12;427(1):212-7. doi: 10.1016/j.bbrc.2012.09.053. Epub 2012 Sep 17.

10.

Crystallization and X-ray diffraction studies of arginine kinase from the white Pacific shrimp Litopenaeus vannamei.

Lopez-Zavala AA, Sotelo-Mundo RR, Garcia-Orozco KD, Isac-Martinez F, Brieba LG, Rudiño-Piñera E.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jul 1;68(Pt 7):783-5. doi: 10.1107/S1744309112020180. Epub 2012 Jun 27.

11.

Rate-limiting domain and loop motions in arginine kinase.

Davulcu O, Skalicky JJ, Chapman MS.

Biochemistry. 2011 May 17;50(19):4011-8. doi: 10.1021/bi101664u. Epub 2011 Apr 22.

12.

The structure of lombricine kinase: implications for phosphagen kinase conformational changes.

Bush DJ, Kirillova O, Clark SA, Davulcu O, Fabiola F, Xie Q, Somasundaram T, Ellington WR, Chapman MS.

J Biol Chem. 2011 Mar 18;286(11):9338-50. doi: 10.1074/jbc.M110.202796. Epub 2011 Jan 6.

13.

Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Niu X, Bruschweiler-Li L, Davulcu O, Skalicky JJ, Brüschweiler R, Chapman MS.

J Mol Biol. 2011 Jan 14;405(2):479-96. doi: 10.1016/j.jmb.2010.11.007. Epub 2010 Nov 12.

14.

Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.

Lim K, Pullalarevu S, Surabian KT, Howard A, Suzuki T, Moult J, Herzberg O.

Biochemistry. 2010 Mar 9;49(9):2031-41. doi: 10.1021/bi9020988.

15.

Intrinsic domain and loop dynamics commensurate with catalytic turnover in an induced-fit enzyme.

Davulcu O, Flynn PF, Chapman MS, Skalicky JJ.

Structure. 2009 Oct 14;17(10):1356-67. doi: 10.1016/j.str.2009.08.014.

16.

Crystallization and X-ray analysis of the Schistosoma mansoni guanidino kinase.

Awama AM, Paracuellos P, Laurent S, Dissous C, Marcillat O, Gouet P.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Sep 1;64(Pt 9):854-7. doi: 10.1107/S1744309108025979. Epub 2008 Aug 20.

17.

Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome.

Korostelev A, Trakhanov S, Asahara H, Laurberg M, Lancaster L, Noller HF.

Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):16840-3. Epub 2007 Oct 16.

19.

A tyrosine kinase and its activator control the activity of the CtsR heat shock repressor in B. subtilis.

Kirstein J, Zühlke D, Gerth U, Turgay K, Hecker M.

EMBO J. 2005 Oct 5;24(19):3435-45. Epub 2005 Sep 15.

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