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Items: 1 to 20 of 135

1.

Profile hidden Markov models.

Eddy SR.

Bioinformatics. 1998;14(9):755-63. Review.

PMID:
9918945
2.
3.

Predicting protein structure using hidden Markov models.

Karplus K, Sjölander K, Barrett C, Cline M, Haussler D, Hughey R, Holm L, Sander C.

Proteins. 1997;Suppl 1:134-9.

PMID:
9485505
5.

COACH: profile-profile alignment of protein families using hidden Markov models.

Edgar RC, Sjölander K.

Bioinformatics. 2004 May 22;20(8):1309-18. Epub 2004 Feb 12.

PMID:
14962937
6.

HMMEditor: a visual editing tool for profile hidden Markov model.

Dai J, Cheng J.

BMC Genomics. 2008;9 Suppl 1:S8. doi: 10.1186/1471-2164-9-S1-S8.

7.
8.

Hidden Markov models for sequence analysis: extension and analysis of the basic method.

Hughey R, Krogh A.

Comput Appl Biosci. 1996 Apr;12(2):95-107.

PMID:
8744772
9.

SATCHMO: sequence alignment and tree construction using hidden Markov models.

Edgar RC, Sjölander K.

Bioinformatics. 2003 Jul 22;19(11):1404-11.

PMID:
12874053
10.

A comparison of profile hidden Markov model procedures for remote homology detection.

Madera M, Gough J.

Nucleic Acids Res. 2002 Oct 1;30(19):4321-8.

11.

webPRC: the Profile Comparer for alignment-based searching of public domain databases.

Brandt BW, Heringa J.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W48-52. doi: 10.1093/nar/gkp279. Epub 2009 May 6.

12.

Protein homology detection by HMM-HMM comparison.

Söding J.

Bioinformatics. 2005 Apr 1;21(7):951-60. Epub 2004 Nov 5. Erratum in: Bioinformatics. 2005 May 1;21(9):2144.

PMID:
15531603
13.

Enhancing the quality of phylogenetic analysis using fuzzy hidden Markov model alignments.

Collyda C, Diplaris S, Mitkas P, Maglaveras N, Pappas C.

Stud Health Technol Inform. 2007;129(Pt 2):1245-9.

PMID:
17911914
14.

Sequence comparison and protein structure prediction.

Dunbrack RL Jr.

Curr Opin Struct Biol. 2006 Jun;16(3):374-84. Epub 2006 May 19. Review.

PMID:
16713709
15.

Using guide trees to construct multiple-sequence evolutionary HMMs.

Holmes I.

Bioinformatics. 2003;19 Suppl 1:i147-57.

PMID:
12855451
16.

Detecting distant homologs using phylogenetic tree-based HMMs.

Qian B, Goldstein RA.

Proteins. 2003 Aug 15;52(3):446-53.

17.

Transposable element annotation of the rice genome.

Juretic N, Bureau TE, Bruskiewich RM.

Bioinformatics. 2004 Jan 22;20(2):155-60.

PMID:
14734305
18.

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Terrapon N, Gascuel O, Maréchal E, Bréhélin L.

BMC Bioinformatics. 2012 May 1;13:67. doi: 10.1186/1471-2105-13-67.

19.

Hidden Markov models.

Eddy SR.

Curr Opin Struct Biol. 1996 Jun;6(3):361-5. Review.

PMID:
8804822
20.

Fuzzy Hidden Markov Models: a new approach in multiple sequence alignment.

Collyda C, Diplaris S, Mitkas PA, Maglaveras N, Pappas C.

Stud Health Technol Inform. 2006;124:99-104.

PMID:
17108510

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