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Items: 1 to 20 of 164

1.

A genomic perspective on protein families.

Tatusov RL, Koonin EV, Lipman DJ.

Science. 1997 Oct 24;278(5338):631-7. Review.

PMID:
9381173
3.

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

Genome Res. 1999 Jul;9(7):608-28.

4.
5.

A phylogenomic study of the MutS family of proteins.

Eisen JA.

Nucleic Acids Res. 1998 Sep 15;26(18):4291-300.

6.

Genes from nine genomes are separated into their organisms in the dinucleotide composition space.

Nakashima H, Ota M, Nishikawa K, Ooi T.

DNA Res. 1998 Oct 30;5(5):251-9.

PMID:
9872449
7.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
8.

Functional classes in the three domains of life.

Andrade MA, Ouzounis C, Sander C, Tamames J, Valencia A.

J Mol Evol. 1999 Nov;49(5):551-7.

PMID:
10552036
9.

Universal protein families and the functional content of the last universal common ancestor.

Kyrpides N, Overbeek R, Ouzounis C.

J Mol Evol. 1999 Oct;49(4):413-23.

PMID:
10485999
11.

Using the COG database to improve gene recognition in complete genomes.

Natale DA, Galperin MY, Tatusov RL, Koonin EV.

Genetica. 2000;108(1):9-17.

PMID:
11145426
13.

A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.

Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, Gelius-Dietrich G, Henze K, Kretschmann E, Richly E, Leister D, Bryant D, Steel MA, Lockhart PJ, Penny D, Martin W.

Mol Biol Evol. 2004 Sep;21(9):1643-60. Epub 2004 May 21.

PMID:
15155797
14.

The COG database: an updated version includes eukaryotes.

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.

15.

Prokaryotic phylogenies inferred from protein structural domains.

Deeds EJ, Hennessey H, Shakhnovich EI.

Genome Res. 2005 Mar;15(3):393-402.

17.

Protein structural classes in five complete genomes.

Frishman D, Mewes HW.

Nat Struct Biol. 1997 Aug;4(8):626-8.

PMID:
9253410
18.

Orthologs, paralogs and genome comparisons.

Gogarten JP, Olendzenski L.

Curr Opin Genet Dev. 1999 Dec;9(6):630-6. Review.

PMID:
10607614
19.

The COG database: a tool for genome-scale analysis of protein functions and evolution.

Tatusov RL, Galperin MY, Natale DA, Koonin EV.

Nucleic Acids Res. 2000 Jan 1;28(1):33-6.

20.

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