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Items: 1 to 20 of 113

1.

Consistency, characters, and the likelihood of correct phylogenetic inference.

Givnish TJ, Sytsma KJ.

Mol Phylogenet Evol. 1997 Jun;7(3):320-30.

PMID:
9187091
2.

Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: contrasting matK, trnT-F, and rbcL in basal angiosperms.

Müller KF, Borsch T, Hilu KW.

Mol Phylogenet Evol. 2006 Oct;41(1):99-117. Epub 2006 Jul 6.

PMID:
16904914
3.

A penalty of using anonymous dominant markers (AFLPs, ISSRs, and RAPDs) for phylogenetic inference.

Simmons MP, Zhang LB, Webb CT, Müller K.

Mol Phylogenet Evol. 2007 Feb;42(2):528-42. Epub 2006 Aug 22.

PMID:
16997581
4.
5.

Inferring ancestral sequences in taxon-rich phylogenies.

Gascuel O, Steel M.

Math Biosci. 2010 Oct;227(2):125-35. doi: 10.1016/j.mbs.2010.07.002. Epub 2010 Jul 11.

PMID:
20627110
6.

Bayesian inference of phylogeny and its impact on evolutionary biology.

Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP.

Science. 2001 Dec 14;294(5550):2310-4.

PMID:
11743192
7.

Reconstructing phylogeny by quadratically approximated maximum likelihood.

Woodhams MD, Hendy MD.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i348-54.

PMID:
15262819
8.
9.
10.

Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.

Katoh K, Kuma K, Miyata T.

J Mol Evol. 2001 Oct-Nov;53(4-5):477-84.

PMID:
11675608
11.
12.
13.

Estimating a binary character's effect on speciation and extinction.

Maddison WP, Midford PE, Otto SP.

Syst Biol. 2007 Oct;56(5):701-10.

PMID:
17849325
14.
15.

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.

Stamatakis A, Ludwig T, Meier H.

Bioinformatics. 2005 Feb 15;21(4):456-63. Epub 2004 Dec 17.

PMID:
15608047
16.

Phylogenetic inference from conserved sites alignments.

Grundy WN, Naylor GJ.

J Exp Zool. 1999 Aug 15;285(2):128-39.

PMID:
10440724
17.
19.

Maximum likelihood Jukes-Cantor triplets: analytic solutions.

Chor B, Hendy MD, Snir S.

Mol Biol Evol. 2006 Mar;23(3):626-32. Epub 2005 Nov 30.

PMID:
16319091
20.

PAML 4: phylogenetic analysis by maximum likelihood.

Yang Z.

Mol Biol Evol. 2007 Aug;24(8):1586-91. Epub 2007 May 4.

PMID:
17483113

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