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Items: 1 to 20 of 223

1.

The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode.

Omichinski JG, Pedone PV, Felsenfeld G, Gronenborn AM, Clore GM.

Nat Struct Biol. 1997 Feb;4(2):122-32.

PMID:
9033593
2.

The single Cys2-His2 zinc finger domain of the GAGA protein flanked by basic residues is sufficient for high-affinity specific DNA binding.

Pedone PV, Ghirlando R, Clore GM, Gronenborn AM, Felsenfeld G, Omichinski JG.

Proc Natl Acad Sci U S A. 1996 Apr 2;93(7):2822-6. Erratum in: Proc Natl Acad Sci U S A 1996 Jun 25;93(13):6846.

3.

Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity.

Wuttke DS, Foster MP, Case DA, Gottesfeld JM, Wright PE.

J Mol Biol. 1997 Oct 17;273(1):183-206.

PMID:
9367756
4.

The GAGA factor of Drosophila binds triple-stranded DNA.

Jiménez-García E, Vaquero A, Espinás ML, Soliva R, Orozco M, Bernués J, Azorín F.

J Biol Chem. 1998 Sep 18;273(38):24640-8.

5.

The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors.

Starich MR, Wikström M, Arst HN Jr, Clore GM, Gronenborn AM.

J Mol Biol. 1998 Apr 3;277(3):605-20.

PMID:
9533883
6.

The pipsqueak protein of Drosophila melanogaster binds to GAGA sequences through a novel DNA-binding domain.

Lehmann M, Siegmund T, Lintermann KG, Korge G.

J Biol Chem. 1998 Oct 23;273(43):28504-9.

7.
8.

Assessment of major and minor groove DNA interactions by the zinc fingers of Xenopus transcription factor IIIA.

McBryant SJ, Gedulin B, Clemens KR, Wright PE, Gottesfeld JM.

Nucleic Acids Res. 1996 Jul 1;24(13):2567-74.

9.

Effects of bulkiness and hydrophobicity of an aliphatic amino acid in the recognition helix of the GAGA zinc finger on the stability of the hydrophobic core and DNA binding affinity.

Dhanasekaran M, Negi S, Imanishi M, Suzuki M, Sugiura Y.

Biochemistry. 2008 Nov 11;47(45):11717-24. doi: 10.1021/bi801306d. Epub 2008 Oct 15.

PMID:
18855425
10.

Sequence-specific DNA binding by a two zinc-finger peptide from the Drosophila melanogaster Tramtrack protein.

Fairall L, Harrison SD, Travers AA, Rhodes D.

J Mol Biol. 1992 Jul 20;226(2):349-66.

PMID:
1640455
11.

Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity.

Gruschus JM, Tsao DH, Wang LH, Nirenberg M, Ferretti JA.

Biochemistry. 1997 May 6;36(18):5372-80.

PMID:
9154919
12.
13.
14.

A zinc finger directory for high-affinity DNA recognition.

Jamieson AC, Wang H, Kim SH.

Proc Natl Acad Sci U S A. 1996 Nov 12;93(23):12834-9.

15.

Structures of DNA-binding mutant zinc finger domains: implications for DNA binding.

Hoffman RC, Horvath SJ, Klevit RE.

Protein Sci. 1993 Jun;2(6):951-65.

16.

Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain.

Nagadoi A, Nakazawa K, Uda H, Okuno K, Maekawa T, Ishii S, Nishimura Y.

J Mol Biol. 1999 Apr 2;287(3):593-607.

PMID:
10092462
17.

NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1.

Omichinski JG, Clore GM, Schaad O, Felsenfeld G, Trainor C, Appella E, Stahl SJ, Gronenborn AM.

Science. 1993 Jul 23;261(5120):438-46.

PMID:
8332909
18.

Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding.

Allain FH, Yen YM, Masse JE, Schultze P, Dieckmann T, Johnson RC, Feigon J.

EMBO J. 1999 May 4;18(9):2563-79.

19.
20.

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.

Ogata K, Morikawa S, Nakamura H, Sekikawa A, Inoue T, Kanai H, Sarai A, Ishii S, Nishimura Y.

Cell. 1994 Nov 18;79(4):639-48.

PMID:
7954830

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