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Items: 1 to 20 of 128

1.

BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design.

Mayer C, Sann M, Donath A, Meixner M, Podsiadlowski L, Peters RS, Petersen M, Meusemann K, Liere K, Wägele JW, Misof B, Bleidorn C, Ohl M, Niehuis O.

Mol Biol Evol. 2016 Jul;33(7):1875-86. doi: 10.1093/molbev/msw056. Epub 2016 Mar 23.

PMID:
27009209
2.

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes.

Petersen M, Meusemann K, Donath A, Dowling D, Liu S, Peters RS, Podsiadlowski L, Vasilikopoulos A, Zhou X, Misof B, Niehuis O.

BMC Bioinformatics. 2017 Feb 16;18(1):111. doi: 10.1186/s12859-017-1529-8.

3.

Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms.

Yuan H, Jiang J, Jiménez FA, Hoberg EP, Cook JA, Galbreath KE, Li C.

Mol Ecol Resour. 2016 Sep;16(5):1095-106. doi: 10.1111/1755-0998.12532. Epub 2016 Apr 28.

PMID:
27037792
4.

Anchored hybrid enrichment for massively high-throughput phylogenomics.

Lemmon AR, Emme SA, Lemmon EM.

Syst Biol. 2012 Oct;61(5):727-44. doi: 10.1093/sysbio/sys049. Epub 2012 May 17.

PMID:
22605266
5.

aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data.

Allen JM, Huang DI, Cronk QC, Johnson KP.

BMC Bioinformatics. 2015 Mar 25;16:98. doi: 10.1186/s12859-015-0515-2.

6.

Target enrichment sequencing in cultivated peanut (Arachis hypogaea L.) using probes designed from transcript sequences.

Peng Z, Fan W, Wang L, Paudel D, Leventini D, Tillman BL, Wang J.

Mol Genet Genomics. 2017 Oct;292(5):955-965. doi: 10.1007/s00438-017-1327-z. Epub 2017 May 10.

PMID:
28492983
7.

Phylogenomic analysis of Apoidea sheds new light on the sister group of bees.

Sann M, Niehuis O, Peters RS, Mayer C, Kozlov A, Podsiadlowski L, Bank S, Meusemann K, Misof B, Bleidorn C, Ohl M.

BMC Evol Biol. 2018 May 18;18(1):71. doi: 10.1186/s12862-018-1155-8.

8.

A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits.

Karamitros T, Magiorkinis G.

Nucleic Acids Res. 2015 Dec 15;43(22):e152. doi: 10.1093/nar/gkv773. Epub 2015 Aug 3.

9.

[Establishment of target genomic DNA capturing system for next generation sequencing].

Chen D, Zhang W, Zhu ZD, Huang Y, Wang P, Zhou BB, Yang XN, Xiao HS, Zhang QH.

Yi Chuan. 2010 Dec;32(12):1296-303. Chinese.

PMID:
21513157
10.

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera.

Faircloth BC, Branstetter MG, White ND, Brady SG.

Mol Ecol Resour. 2015 May;15(3):489-501. doi: 10.1111/1755-0998.12328. Epub 2014 Sep 29.

11.

Real-time selective sequencing using nanopore technology.

Loose M, Malla S, Stout M.

Nat Methods. 2016 Sep;13(9):751-4. doi: 10.1038/nmeth.3930. Epub 2016 Jul 25.

12.

High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography.

Lemmon AR, Lemmon EM.

Syst Biol. 2012 Oct;61(5):745-61. doi: 10.1093/sysbio/sys051. Epub 2012 May 18.

PMID:
22610088
13.

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment.

Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJ, Wickett NJ.

Appl Plant Sci. 2016 Jul 12;4(7). pii: apps.1600016. doi: 10.3732/apps.1600016. eCollection 2016 Jul.

15.

Levenshtein error-correcting barcodes for multiplexed DNA sequencing.

Buschmann T, Bystrykh LV.

BMC Bioinformatics. 2013 Sep 11;14:272. doi: 10.1186/1471-2105-14-272.

16.

MrBait: Universal identification and design of targeted-enrichment capture probes.

Chafin TK, Douglas MR, Douglas ME.

Bioinformatics. 2018 Jun 29. doi: 10.1093/bioinformatics/bty548. [Epub ahead of print]

PMID:
29961853
17.

Assessing the enrichment performance in targeted resequencing experiments.

Frommolt P, Abdallah AT, Altmüller J, Motameny S, Thiele H, Becker C, Stemshorn K, Fischer M, Freilinger T, Nürnberg P.

Hum Mutat. 2012 Apr;33(4):635-41. doi: 10.1002/humu.22036. Epub 2012 Feb 28.

PMID:
22290614
18.

DNA barcodes identify 99 percent of apoid wasp species (Hymenoptera: Ampulicidae, Crabronidae, Sphecidae) from the Western Palearctic.

Schmid-Egger C, Straka J, Ljubomirov T, Blagoev GA, Morinière J, Schmidt S.

Mol Ecol Resour. 2018 Nov 15. doi: 10.1111/1755-0998.12963. [Epub ahead of print]

PMID:
30431229
19.

Oligonucleotide primers for targeted amplification of single-copy nuclear genes in apocritan Hymenoptera.

Hartig G, Peters RS, Borner J, Etzbauer C, Misof B, Niehuis O.

PLoS One. 2012;7(6):e39826. doi: 10.1371/journal.pone.0039826. Epub 2012 Jun 29.

20.

Capturing protein-coding genes across highly divergent species.

Li C, Hofreiter M, Straube N, Corrigan S, Naylor GJ.

Biotechniques. 2013 Jun;54(6):321-6. doi: 10.2144/000114039.

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