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Items: 1 to 20 of 105

1.

Textrous!: extracting semantic textual meaning from gene sets.

Chen H, Martin B, Daimon CM, Siddiqui S, Luttrell LM, Maudsley S.

PLoS One. 2013 Apr 30;8(4):e62665. doi: 10.1371/journal.pone.0062665. Print 2013.

2.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

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Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

6.

Predicting the functions of a protein from its ability to associate with other molecules.

Taha K, Yoo PD.

BMC Bioinformatics. 2016 Jan 15;17:34. doi: 10.1186/s12859-016-0882-3. Erratum in: BMC Bioinformatics. 2016;17:105.

7.

Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts.

Roy S, Curry BC, Madahian B, Homayouni R.

BMC Bioinformatics. 2016 Oct 6;17(Suppl 13):350.

8.

An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.

Tsatsaronis G, Balikas G, Malakasiotis P, Partalas I, Zschunke M, Alvers MR, Weissenborn D, Krithara A, Petridis S, Polychronopoulos D, Almirantis Y, Pavlopoulos J, Baskiotis N, Gallinari P, Artiéres T, Ngomo AC, Heino N, Gaussier E, Barrio-Alvers L, Schroeder M, Androutsopoulos I, Paliouras G.

BMC Bioinformatics. 2015 Apr 30;16:138. doi: 10.1186/s12859-015-0564-6.

9.

Semantically linking and browsing PubMed abstracts with gene ontology.

Vanteru BC, Shaik JS, Yeasin M.

BMC Genomics. 2008;9 Suppl 1:S10. doi: 10.1186/1471-2164-9-S1-S10.

10.

User centered and ontology based information retrieval system for life sciences.

Sy MF, Ranwez S, Montmain J, Regnault A, Crampes M, Ranwez V.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S4. doi: 10.1186/1471-2105-13-S1-S4.

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Arrowsmith two-node search interface: a tutorial on finding meaningful links between two disparate sets of articles in MEDLINE.

Smalheiser NR, Torvik VI, Zhou W.

Comput Methods Programs Biomed. 2009 May;94(2):190-7. doi: 10.1016/j.cmpb.2008.12.006. Epub 2009 Jan 30.

14.

Semantic role labeling for protein transport predicates.

Bethard S, Lu Z, Martin JH, Hunter L.

BMC Bioinformatics. 2008 Jun 11;9:277. doi: 10.1186/1471-2105-9-277.

15.

Effective use of latent semantic indexing and computational linguistics in biological and biomedical applications.

Chen H, Martin B, Daimon CM, Maudsley S.

Front Physiol. 2013 Jan 30;4:8. doi: 10.3389/fphys.2013.00008. eCollection 2013.

16.

Semantic relation mining of solid compounds in medical corpora.

Kokkinakis D.

Stud Health Technol Inform. 2008;136:217-22.

PMID:
18487734
17.

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Huang da W, Sherman BT, Lempicki RA.

Nat Protoc. 2009;4(1):44-57. doi: 10.1038/nprot.2008.211.

18.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

19.

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.

Masseroli M, Galati O, Manzotti M, Gibert K, Pinciroli F.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S18.

20.

Ontological Discovery Environment: a system for integrating gene-phenotype associations.

Baker EJ, Jay JJ, Philip VM, Zhang Y, Li Z, Kirova R, Langston MA, Chesler EJ.

Genomics. 2009 Dec;94(6):377-87. doi: 10.1016/j.ygeno.2009.08.016. Epub 2009 Sep 3.

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