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Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast.

Opulente DA, Morales CM, Carey LB, Rest JS.

PLoS One. 2013;8(1):e54403. doi: 10.1371/journal.pone.0054403. Epub 2013 Jan 10.


Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast.

Spor A, Kvitek DJ, Nidelet T, Martin J, Legrand J, Dillmann C, Bourgais A, de Vienne D, Sherlock G, Sicard D.

Evolution. 2014 Mar;68(3):772-790. doi: 10.1111/evo.12302. Epub 2013 Nov 25.


Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environments.

Nidelet T, Brial P, Camarasa C, Dequin S.

Microb Cell Fact. 2016 Apr 5;15:58. doi: 10.1186/s12934-016-0456-0.


Pleiotropy and GAL pathway degeneration in yeast.

MacLean RC.

J Evol Biol. 2007 Jul;20(4):1333-8.


Environmentally induced changes in correlated responses to selection reveal variable pleiotropy across a complex genetic network.

Sikkink KL, Reynolds RM, Cresko WA, Phillips PC.

Evolution. 2015 May;69(5):1128-42. doi: 10.1111/evo.12651. Epub 2015 May 7.


Differential regulation of antagonistic pleiotropy in synthetic and natural populations suggests its role in adaptation.

Yadav A, Radhakrishnan A, Bhanot G, Sinha H.

G3 (Bethesda). 2015 Feb 23;5(5):699-709. doi: 10.1534/g3.115.017020.


Toward a molecular understanding of pleiotropy.

He X, Zhang J.

Genetics. 2006 Aug;173(4):1885-91. Epub 2006 May 15.


A negative relationship between mutation pleiotropy and fitness effect in yeast.

Cooper TF, Ostrowski EA, Travisano M.

Evolution. 2007 Jun;61(6):1495-9.


Evolution of pleiotropy: epistatic interaction pattern supports a mechanistic model underlying variation in genotype-phenotype map.

Pavlicev M, Norgard EA, Fawcett GL, Cheverud JM.

J Exp Zool B Mol Dev Evol. 2011 Jul 15;316(5):371-85. doi: 10.1002/jez.b.21410. Epub 2011 Apr 1.


Trait variation in yeast is defined by population history.

Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A.

PLoS Genet. 2011 Jun;7(6):e1002111. doi: 10.1371/journal.pgen.1002111. Epub 2011 Jun 16.


Aging yeast gain a competitive advantage on non-optimal carbon sources.

Frenk S, Pizza G, Walker RV, Houseley J.

Aging Cell. 2017 Jun;16(3):602-604. doi: 10.1111/acel.12582. Epub 2017 Mar 1.


Phylogenetic signal in phenotypic traits related to carbon source assimilation and chemical sensitivity in Acinetobacter species.

Van Assche A, Álvarez-Pérez S, de Breij A, De Brabanter J, Willems KA, Dijkshoorn L, Lievens B.

Appl Microbiol Biotechnol. 2017 Jan;101(1):367-379. doi: 10.1007/s00253-016-7866-0. Epub 2016 Oct 12.


Sign epistasis limits evolutionary trade-offs at the confluence of single- and multi-carbon metabolism in Methylobacterium extorquens AM1.

Carroll SM, Lee MC, Marx CJ.

Evolution. 2014 Mar;68(3):760-71. doi: 10.1111/evo.12301. Epub 2013 Nov 20.


Gene functional trade-offs and the evolution of pleiotropy.

Guillaume F, Otto SP.

Genetics. 2012 Dec;192(4):1389-409. doi: 10.1534/genetics.112.143214. Epub 2012 Sep 14.


Essential gene disruptions reveal complex relationships between phenotypic robustness, pleiotropy, and fitness.

Bauer CR, Li S, Siegal ML.

Mol Syst Biol. 2015 Jan 21;11(1):773. doi: 10.15252/msb.20145264.


Phenotypic constraints promote latent versatility and carbon efficiency in metabolic networks.

Bardoscia M, Marsili M, Samal A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jul;92(1):012809. Epub 2015 Jul 14.


Adaptively evolved yeast mutants on galactose show trade-offs in carbon utilization on glucose.

Hong KK, Nielsen J.

Metab Eng. 2013 Mar;16:78-86. doi: 10.1016/j.ymben.2013.01.007. Epub 2013 Jan 29.


Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast.

Skelly DA, Merrihew GE, Riffle M, Connelly CF, Kerr EO, Johansson M, Jaschob D, Graczyk B, Shulman NJ, Wakefield J, Cooper SJ, Fields S, Noble WS, Muller EG, Davis TN, Dunham MJ, Maccoss MJ, Akey JM.

Genome Res. 2013 Sep;23(9):1496-504. doi: 10.1101/gr.155762.113. Epub 2013 May 29.


Phenotypic landscape of Saccharomyces cerevisiae during wine fermentation: evidence for origin-dependent metabolic traits.

Camarasa C, Sanchez I, Brial P, Bigey F, Dequin S.

PLoS One. 2011;6(9):e25147. doi: 10.1371/journal.pone.0025147. Epub 2011 Sep 16.


Evolutionary study of the isoflavonoid pathway based on multiple copies analysis in soybean.

Chu S, Wang J, Cheng H, Yang Q, Yu D.

BMC Genet. 2014 Jun 24;15:76. doi: 10.1186/1471-2156-15-76.

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