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Items: 1 to 20 of 186

1.

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, Lundberg E, Mias G, Menon R, Mu Z, Nice E, Paik YK, Uhlen M, Wells L, Wu SL, Yan F, Zhang F, Zhang Y, Snyder M, Omenn GS, Beavis RC, Hancock WS.

J Proteome Res. 2013 Jan 4;12(1):45-57. doi: 10.1021/pr300985j. Epub 2012 Dec 21.

2.

GenomewidePDB, a proteomic database exploring the comprehensive protein parts list and transcriptome landscape in human chromosomes.

Jeong SK, Lee HJ, Na K, Cho JY, Lee MJ, Kwon JY, Kim H, Park YM, Yoo JS, Hancock WS, Paik YK.

J Proteome Res. 2013 Jan 4;12(1):106-11. doi: 10.1021/pr3009447. Epub 2012 Dec 19.

PMID:
23252913
3.

Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.

Omenn GS, Lane L, Lundberg EK, Beavis RC, Overall CM, Deutsch EW.

J Proteome Res. 2016 Nov 4;15(11):3951-3960. Epub 2016 Sep 20.

4.

Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project.

Shiromizu T, Adachi J, Watanabe S, Murakami T, Kuga T, Muraoka S, Tomonaga T.

J Proteome Res. 2013 Jun 7;12(6):2414-21. doi: 10.1021/pr300825v. Epub 2013 Jan 11.

PMID:
23312004
5.

Chromosome-centric human proteome project: deciphering proteins associated with glioma and neurodegenerative disorders on chromosome 12.

Gupta MK, Jayaram S, Madugundu AK, Chavan S, Advani J, Pandey A, Thongboonkerd V, Sirdeshmukh R.

J Proteome Res. 2014 Jul 3;13(7):3178-90. doi: 10.1021/pr500023p. Epub 2014 Jun 24.

PMID:
24804578
6.

neXtProt: organizing protein knowledge in the context of human proteome projects.

Gaudet P, Argoud-Puy G, Cusin I, Duek P, Evalet O, Gateau A, Gleizes A, Pereira M, Zahn-Zabal M, Zwahlen C, Bairoch A, Lane L.

J Proteome Res. 2013 Jan 4;12(1):293-8. doi: 10.1021/pr300830v. Epub 2012 Dec 3.

PMID:
23205526
7.

The strategy, organization, and progress of the HUPO Human Proteome Project.

Omenn GS.

J Proteomics. 2014 Apr 4;100:3-7. doi: 10.1016/j.jprot.2013.10.012. Epub 2013 Oct 19.

8.

Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project.

Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M.

J Proteome Res. 2015 Sep 4;14(9):3530-40. doi: 10.1021/acs.jproteome.5b00474. Epub 2015 Aug 5.

PMID:
26216070
9.

Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.

Omenn GS.

Biochim Biophys Acta. 2014 May;1844(5):866-73. doi: 10.1016/j.bbapap.2013.10.016. Epub 2013 Nov 8.

10.

Decoding the disease-associated proteins encoded in the human chromosome 4.

Chen LC, Liu MY, Hsiao YC, Choong WK, Wu HY, Hsu WL, Liao PC, Sung TY, Tsai SF, Yu JS, Chen YJ.

J Proteome Res. 2013 Jan 4;12(1):33-44. doi: 10.1021/pr300829r. Epub 2012 Dec 20.

PMID:
23256888
11.

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins.

Lane L, Bairoch A, Beavis RC, Deutsch EW, Gaudet P, Lundberg E, Omenn GS.

J Proteome Res. 2014 Jan 3;13(1):15-20. doi: 10.1021/pr401144x. Epub 2013 Dec 23.

12.

Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project.

Manda SS, Nirujogi RS, Pinto SM, Kim MS, Datta KK, Sirdeshmukh R, Prasad TS, Thongboonkerd V, Pandey A, Gowda H.

J Proteome Res. 2014 Jul 3;13(7):3166-77. doi: 10.1021/pr401123v. Epub 2014 Jun 24.

PMID:
24960282
13.

Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases.

Hwang H, Park GW, Kim KH, Lee JY, Lee HK, Ji ES, Park SK, Xu T, Yates JR 3rd, Kwon KH, Park YM, Lee HJ, Paik YK, Kim JY, Yoo JS.

J Proteome Res. 2015 Dec 4;14(12):5028-37. doi: 10.1021/acs.jproteome.5b00472. Epub 2015 Nov 16.

PMID:
26549206
14.

GenomewidePDB 2.0: A Newly Upgraded Versatile Proteogenomic Database for the Chromosome-Centric Human Proteome Project.

Jeong SK, Hancock WS, Paik YK.

J Proteome Res. 2015 Sep 4;14(9):3710-9. doi: 10.1021/acs.jproteome.5b00541. Epub 2015 Aug 19.

PMID:
26272709
15.

Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.

Cho JY, Lee HJ, Jeong SK, Kim KY, Kwon KH, Yoo JS, Omenn GS, Baker MS, Hancock WS, Paik YK.

J Proteome Res. 2015 Dec 4;14(12):4959-66. doi: 10.1021/acs.jproteome.5b00578. Epub 2015 Sep 14.

PMID:
26330117
16.

Chromosome 7-centric analysis of proteomics data from a panel of human colon carcinoma cell lines.

Fanayan S, Smith JT, Sethi MK, Cantor D, Goode R, Simpson RJ, Baker MS, Hancock WS, Nice E.

J Proteome Res. 2013 Jan 4;12(1):89-96. doi: 10.1021/pr300906y. Epub 2012 Dec 18.

PMID:
23244008
17.

Functional annotation of the human chromosome 7 "missing" proteins: a bioinformatics approach.

Ranganathan S, Khan JM, Garg G, Baker MS.

J Proteome Res. 2013 Jun 7;12(6):2504-10. doi: 10.1021/pr301082p. Epub 2013 Jan 11.

PMID:
23308364
18.

Spanish human proteome project: dissection of chromosome 16.

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ.

J Proteome Res. 2013 Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12.

PMID:
23234512
19.

In-depth membrane proteomic study of breast cancer tissues for the generation of a chromosome-based protein list.

Muraoka S, Kume H, Adachi J, Shiromizu T, Watanabe S, Masuda T, Ishihama Y, Tomonaga T.

J Proteome Res. 2013 Jan 4;12(1):208-13. doi: 10.1021/pr300824m. Epub 2012 Nov 15.

PMID:
23153008
20.

Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification.

Omenn GS, Lane L, Lundberg EK, Beavis RC, Nesvizhskii AI, Deutsch EW.

J Proteome Res. 2015 Sep 4;14(9):3452-60. doi: 10.1021/acs.jproteome.5b00499. Epub 2015 Jul 30.

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