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Items: 1 to 20 of 124

1.

Controls of nucleosome positioning in the human genome.

Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK.

PLoS Genet. 2012;8(11):e1003036. doi: 10.1371/journal.pgen.1003036. Epub 2012 Nov 15.

2.
3.

Mapping nucleosome positions using DNase-seq.

Zhong J, Luo K, Winter PS, Crawford GE, Iversen ES, Hartemink AJ.

Genome Res. 2016 Mar;26(3):351-64. doi: 10.1101/gr.195602.115. Epub 2016 Jan 15.

5.

Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.

Rizzo JM, Bard JE, Buck MJ.

BMC Mol Biol. 2012 May 6;13:15. doi: 10.1186/1471-2199-13-15.

6.

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.

Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE.

Genome Res. 2013 Jul;23(7):1118-29. doi: 10.1101/gr.150482.112. Epub 2013 May 8.

7.

Asymmetric nucleosomes flank promoters in the budding yeast genome.

Ramachandran S, Zentner GE, Henikoff S.

Genome Res. 2015 Mar;25(3):381-90. doi: 10.1101/gr.182618.114. Epub 2014 Dec 9.

8.

Nucleosome positioning, nucleosome spacing and the nucleosome code.

Clark DJ.

J Biomol Struct Dyn. 2010 Jun;27(6):781-93.

9.
10.

Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq.

Wal M, Pugh BF.

Methods Enzymol. 2012;513:233-50. doi: 10.1016/B978-0-12-391938-0.00010-0.

11.

In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae.

Gossett AJ, Lieb JD.

PLoS Genet. 2012;8(6):e1002771. doi: 10.1371/journal.pgen.1002771. Epub 2012 Jun 21.

12.

MPE-seq, a new method for the genome-wide analysis of chromatin structure.

Ishii H, Kadonaga JT, Ren B.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):E3457-65. doi: 10.1073/pnas.1424804112. Epub 2015 Jun 15.

13.

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.

Fu Y, Sinha M, Peterson CL, Weng Z.

PLoS Genet. 2008 Jul 25;4(7):e1000138. doi: 10.1371/journal.pgen.1000138.

14.

Genome-wide approaches to determining nucleosome occupancy in metazoans using MNase-Seq.

Cui K, Zhao K.

Methods Mol Biol. 2012;833:413-9. doi: 10.1007/978-1-61779-477-3_24.

15.

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum.

Bunnik EM, Polishko A, Prudhomme J, Ponts N, Gill SS, Lonardi S, Le Roch KG.

BMC Genomics. 2014 May 8;15:347. doi: 10.1186/1471-2164-15-347.

16.

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Chereji RV, Kan TW, Grudniewska MK, Romashchenko AV, Berezikov E, Zhimulev IF, Guryev V, Morozov AV, Moshkin YM.

Nucleic Acids Res. 2016 Feb 18;44(3):1036-51. doi: 10.1093/nar/gkv978. Epub 2015 Oct 1.

17.

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A.

Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002.

18.

Analysis of chromatin organization by deep sequencing technologies.

Platt JL, Kent NA, Harwood AJ, Kimmel AR.

Methods Mol Biol. 2013;983:173-83. doi: 10.1007/978-1-62703-302-2_9.

PMID:
23494307
19.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

20.

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules.

Kelly TK, Liu Y, Lay FD, Liang G, Berman BP, Jones PA.

Genome Res. 2012 Dec;22(12):2497-506. doi: 10.1101/gr.143008.112. Epub 2012 Sep 7.

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