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Items: 1 to 20 of 100

1.

Nearest-cell: a fast and easy tool for locating crystal matches in the PDB.

Ramraj V, Evans G, Diprose JM, Esnouf RM.

Acta Crystallogr D Biol Crystallogr. 2012 Dec;68(Pt 12):1697-700. doi: 10.1107/S0907444912040590. Epub 2012 Nov 9.

2.

ACHESYM: an algorithm and server for standardized placement of macromolecular models in the unit cell.

Kowiel M, Jaskolski M, Dauter Z.

Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3290-8. doi: 10.1107/S1399004714024572. Epub 2014 Nov 28.

3.

Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank.

Yang H, Guranovic V, Dutta S, Feng Z, Berman HM, Westbrook JD.

Acta Crystallogr D Biol Crystallogr. 2004 Oct;60(Pt 10):1833-9. Epub 2004 Sep 23.

PMID:
15388930
4.

On the accuracy of unit-cell parameters in protein crystallography.

Dauter Z, Wlodawer A.

Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2217-26. doi: 10.1107/S1399004715015503. Epub 2015 Oct 31.

5.

Protein structure determination by x-ray crystallography.

Ilari A, Savino C.

Methods Mol Biol. 2008;452:63-87. doi: 10.1007/978-1-60327-159-2_3. Review.

PMID:
18563369
6.

Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data.

Terwilliger TC, Bricogne G.

Acta Crystallogr D Biol Crystallogr. 2014 Oct;70(Pt 10):2533-43. doi: 10.1107/S1399004714017040. Epub 2014 Sep 30.

7.

Mathematical aspects of molecular replacement. III. Properties of space groups preferred by proteins in the Protein Data Bank.

Chirikjian G, Sajjadi S, Toptygin D, Yan Y.

Acta Crystallogr A Found Adv. 2015 Mar;71(Pt 2):186-94. doi: 10.1107/S2053273314024358. Epub 2015 Jan 29.

PMID:
25727867
8.

Building a structured PDB: the RS-PDB database.

Szabadka Z, Grolmusz V.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5755-8.

PMID:
17945915
9.

Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.

Wlodawer A, Minor W, Dauter Z, Jaskolski M.

FEBS J. 2008 Jan;275(1):1-21. Epub 2007 Nov 23. Review.

10.

Quality of protein crystal structures.

Brown EN, Ramaswamy S.

Acta Crystallogr D Biol Crystallogr. 2007 Sep;63(Pt 9):941-50. Epub 2007 Aug 17.

PMID:
17704562
11.

Intrinsic disorder in the Protein Data Bank.

Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK.

J Biomol Struct Dyn. 2007 Feb;24(4):325-42.

PMID:
17206849
12.

PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI.

Lee J, Kim SH.

Acta Crystallogr D Biol Crystallogr. 2009 Apr;65(Pt 4):399-402. doi: 10.1107/S090744490900451X. Epub 2009 Mar 19.

PMID:
19307724
13.

Trendspotting in the Protein Data Bank.

Berman HM, Coimbatore Narayanan B, Di Costanzo L, Dutta S, Ghosh S, Hudson BP, Lawson CL, Peisach E, Prlić A, Rose PW, Shao C, Yang H, Young J, Zardecki C.

FEBS Lett. 2013 Apr 17;587(8):1036-45. doi: 10.1016/j.febslet.2012.12.029. Epub 2013 Jan 18. Review.

14.

Evaluating protein structures determined by structural genomics consortia.

Bhattacharya A, Tejero R, Montelione GT.

Proteins. 2007 Mar 1;66(4):778-95.

PMID:
17186527
15.

The beamlines of ELETTRA and their application to structural biology.

Zanini F, Lausi A, Savoia A.

Genetica. 1999;106(1-2):171-80. Review.

PMID:
10710723
16.

Analyzing the simplicial decomposition of spatial protein structures.

Ordög R, Szabadka Z, Grolmusz V.

BMC Bioinformatics. 2008;9 Suppl 1:S11. doi: 10.1186/1471-2105-9-S1-S11.

17.

A third blind test of crystal structure prediction.

Day GM, Motherwell WD, Ammon HL, Boerrigter SX, Della Valle RG, Venuti E, Dzyabchenko A, Dunitz JD, Schweizer B, van Eijck BP, Erk P, Facelli JC, Bazterra VE, Ferraro MB, Hofmann DW, Leusen FJ, Liang C, Pantelides CC, Karamertzanis PG, Price SL, Lewis TC, Nowell H, Torrisi A, Scheraga HA, Arnautova YA, Schmidt MU, Verwer P.

Acta Crystallogr B. 2005 Oct;61(Pt 5):511-27. Epub 2005 Sep 23.

PMID:
16186652
18.

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.

Berman H, Henrick K, Nakamura H, Markley JL.

Nucleic Acids Res. 2007 Jan;35(Database issue):D301-3. Epub 2006 Nov 16.

20.

PSST-2.0: Protein Data Bank Sequence Search Tool.

Ananthalakshmi P, Samayamohan K, Chokalingam C, Mayilarasi C, Sekar K.

Appl Bioinformatics. 2005;4(2):141-5.

PMID:
16128616

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