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Items: 1 to 20 of 101

1.

Coral: an integrated suite of visualizations for comparing clusterings.

Filippova D, Gadani A, Kingsford C.

BMC Bioinformatics. 2012 Oct 29;13:276. doi: 10.1186/1471-2105-13-276.

2.

XCluSim: a visual analytics tool for interactively comparing multiple clustering results of bioinformatics data.

L'Yi S, Ko B, Shin D, Cho YJ, Lee J, Kim B, Seo J.

BMC Bioinformatics. 2015;16 Suppl 11:S5. doi: 10.1186/1471-2105-16-S11-S5. Epub 2015 Aug 13.

3.

A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data.

Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ.

Nucleic Acids Res. 2005 May 10;33(8):2580-94. Print 2005.

4.

MetaClustering: discovery of the different sample clusterings in gene expression data.

Venet D, Bersini H, Iba H.

Genome Inform. 2006;17(2):172-83.

PMID:
17503390
5.

Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana.

Ruan J, Perez J, Hernandez B, Lei C, Sunter G, Sponsel VM.

BMC Bioinformatics. 2011 Nov 24;12 Suppl 12:S2. doi: 10.1186/1471-2105-12-S12-S2.

6.

Annotation-based distance measures for patient subgroup discovery in clinical microarray studies.

Lottaz C, Toedling J, Spang R.

Bioinformatics. 2007 Sep 1;23(17):2256-64. Epub 2007 Jun 22.

PMID:
17586546
7.

Evaluation of clustering algorithms for protein-protein interaction networks.

Brohée S, van Helden J.

BMC Bioinformatics. 2006 Nov 6;7:488.

8.

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings.

Torrente A, Kapushesky M, Brazma A.

Bioinformatics. 2005 Nov 1;21(21):3993-9. Epub 2005 Sep 1.

PMID:
16141251
9.

CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks.

Audenaert P, Van Parys T, Brondel F, Pickavet M, Demeester P, Van de Peer Y, Michoel T.

Bioinformatics. 2011 Jun 1;27(11):1587-8. doi: 10.1093/bioinformatics/btr182. Epub 2011 Apr 8.

PMID:
21478195
10.

MatrixExplorer: a dual-representation system to explore social networks.

Henry N, Fekete JD.

IEEE Trans Vis Comput Graph. 2006 Sep-Oct;12(5):677-84.

PMID:
17080787
11.

EnsCat: clustering of categorical data via ensembling.

Clarke BS, Amiri S, Clarke JL.

BMC Bioinformatics. 2016 Sep 15;17(1):380. doi: 10.1186/s12859-016-1245-9.

12.

Consensus framework for exploring microarray data using multiple clustering methods.

Laderas T, McWeeney S.

OMICS. 2007 Spring;11(1):116-28.

PMID:
17411399
13.

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.

Lysenko A, Defoin-Platel M, Hassani-Pak K, Taubert J, Hodgman C, Rawlings CJ, Saqi M.

BMC Bioinformatics. 2011 May 25;12:203. doi: 10.1186/1471-2105-12-203.

14.

SPICi: a fast clustering algorithm for large biological networks.

Jiang P, Singh M.

Bioinformatics. 2010 Apr 15;26(8):1105-11. doi: 10.1093/bioinformatics/btq078. Epub 2010 Feb 24.

15.

A roadmap of clustering algorithms: finding a match for a biomedical application.

Andreopoulos B, An A, Wang X, Schroeder M.

Brief Bioinform. 2009 May;10(3):297-314. doi: 10.1093/bib/bbn058. Epub 2009 Feb 24.

PMID:
19240124
16.

Growing functional modules from a seed protein via integration of protein interaction and gene expression data.

Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

BMC Bioinformatics. 2007 Oct 23;8:408.

17.

AMIC@: All MIcroarray Clusterings @ once.

Geraci F, Pellegrini M, Renda ME.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W315-9. doi: 10.1093/nar/gkn265. Epub 2008 May 13.

18.

GraphCrunch 2: Software tool for network modeling, alignment and clustering.

Kuchaiev O, Stevanović A, Hayes W, Pržulj N.

BMC Bioinformatics. 2011 Jan 19;12:24. doi: 10.1186/1471-2105-12-24.

19.

DICLENS: divisive clustering ensemble with automatic cluster number.

Mimaroglu S, Aksehirli E.

IEEE/ACM Trans Comput Biol Bioinform. 2012;9(2):408-20. doi: 10.1109/TCBB.2011.129. Epub 2011 Sep 27.

PMID:
21968960
20.

Comparison of chemical clustering methods using graph- and fingerprint-based similarity measures.

Raymond JW, Blankley CJ, Willett P.

J Mol Graph Model. 2003 Mar;21(5):421-33.

PMID:
12543138

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