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Items: 1 to 20 of 99

1.

Computational codon optimization of synthetic gene for protein expression.

Chung BK, Lee DY.

BMC Syst Biol. 2012 Oct 20;6:134. doi: 10.1186/1752-0509-6-134.

2.

Codon optimization of Saccharomyces cerevisiae mating factor alpha prepro-leader to improve recombinant protein production in Pichia pastoris.

Ahn J, Jang MJ, Ang KS, Lee H, Choi ES, Lee DY.

Biotechnol Lett. 2016 Dec;38(12):2137-2143. Epub 2016 Sep 9.

PMID:
27613154
3.
4.

Exploring codon context bias for synthetic gene design of a thermostable invertase in Escherichia coli.

Pek HB, Klement M, Ang KS, Chung BK, Ow DS, Lee DY.

Enzyme Microb Technol. 2015 Jul-Aug;75-76:57-63. doi: 10.1016/j.enzmictec.2015.04.008. Epub 2015 May 1.

PMID:
26047917
5.

Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design.

Chin JX, Chung BK, Lee DY.

Bioinformatics. 2014 Aug 1;30(15):2210-2. doi: 10.1093/bioinformatics/btu192. Epub 2014 Apr 10.

PMID:
24728853
6.

[Effects of gene design on recombinant protein expression: a review].

Cai H, Li Y, Zhang H, Feng F.

Sheng Wu Gong Cheng Xue Bao. 2013 Sep;29(9):1201-13. Review. Chinese.

PMID:
24409684
7.

Enhanced expression of codon optimized interferon gamma in CHO cells.

Chung BK, Yusufi FN, Mariati, Yang Y, Lee DY.

J Biotechnol. 2013 Sep 10;167(3):326-33. doi: 10.1016/j.jbiotec.2013.07.011. Epub 2013 Jul 19.

PMID:
23876479
8.

COStar: a D-star Lite-based dynamic search algorithm for codon optimization.

Liu X, Deng R, Wang J, Wang X.

J Theor Biol. 2014 Mar 7;344:19-30. doi: 10.1016/j.jtbi.2013.11.022. Epub 2013 Dec 4.

PMID:
24316385
9.

A condition-specific codon optimization approach for improved heterologous gene expression in Saccharomyces cerevisiae.

Lanza AM, Curran KA, Rey LG, Alper HS.

BMC Syst Biol. 2014 Mar 17;8:33. doi: 10.1186/1752-0509-8-33.

10.

Multi-omics data driven analysis establishes reference codon biases for synthetic gene design in microbial and mammalian cells.

Ang KS, Kyriakopoulos S, Li W, Lee DY.

Methods. 2016 Jun 1;102:26-35. doi: 10.1016/j.ymeth.2016.01.016. Epub 2016 Feb 2.

PMID:
26850284
11.

Enhanced expression of a recombinant malaria candidate vaccine in Escherichia coli by codon optimization.

Zhou Z, Schnake P, Xiao L, Lal AA.

Protein Expr Purif. 2004 Mar;34(1):87-94.

PMID:
14766303
12.

Enhanced free fatty acid production by codon-optimized Lactococcus lactis acyl-ACP thioesterase gene expression in Escherichia coli using crude glycerol.

Lee S, Park S, Park C, Pack SP, Lee J.

Enzyme Microb Technol. 2014 Dec;67:8-16. doi: 10.1016/j.enzmictec.2014.08.004. Epub 2014 Aug 23.

PMID:
25442943
14.

Optimizing the codon usage of synthetic gene with QPSO algorithm.

Cai Y, Sun J, Wang J, Ding Y, Tian N, Liao X, Xu W.

J Theor Biol. 2008 Sep 7;254(1):123-7. doi: 10.1016/j.jtbi.2008.05.010. Epub 2008 May 17.

PMID:
18579159
15.

Gene Designer: a synthetic biology tool for constructing artificial DNA segments.

Villalobos A, Ness JE, Gustafsson C, Minshull J, Govindarajan S.

BMC Bioinformatics. 2006 Jun 6;7:285.

16.

OPTIMIZER: a web server for optimizing the codon usage of DNA sequences.

Puigbò P, Guzmán E, Romeu A, Garcia-Vallvé S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W126-31. Epub 2007 Apr 16.

17.

Design parameters to control synthetic gene expression in Escherichia coli.

Welch M, Govindarajan S, Ness JE, Villalobos A, Gurney A, Minshull J, Gustafsson C.

PLoS One. 2009 Sep 14;4(9):e7002. doi: 10.1371/journal.pone.0007002.

18.

EuGene: maximizing synthetic gene design for heterologous expression.

Gaspar P, Oliveira JL, Frommlet J, Santos MA, Moura G.

Bioinformatics. 2012 Oct 15;28(20):2683-4. doi: 10.1093/bioinformatics/bts465. Epub 2012 Jul 30.

PMID:
22847936
19.

Gene composer: database software for protein construct design, codon engineering, and gene synthesis.

Lorimer D, Raymond A, Walchli J, Mixon M, Barrow A, Wallace E, Grice R, Burgin A, Stewart L.

BMC Biotechnol. 2009 Apr 21;9:36. doi: 10.1186/1472-6750-9-36.

20.

UpGene: Application of a web-based DNA codon optimization algorithm.

Gao W, Rzewski A, Sun H, Robbins PD, Gambotto A.

Biotechnol Prog. 2004 Mar-Apr;20(2):443-8.

PMID:
15058988

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