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Items: 1 to 20 of 153

1.

Evolutionarily consistent families in SCOP: sequence, structure and function.

Pethica RB, Levitt M, Gough J.

BMC Struct Biol. 2012 Oct 18;12:27. doi: 10.1186/1472-6807-12-27.

2.

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-GarcĂ­a A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27.

3.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

PMID:
15647305
4.
5.

Automatic classification of protein structures using low-dimensional structure space mappings.

Asarnow D, Singh R.

BMC Bioinformatics. 2014;15 Suppl 2:S1. doi: 10.1186/1471-2105-15-S2-S1. Epub 2014 Jan 24.

6.

SCOP database in 2004: refinements integrate structure and sequence family data.

Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D226-9.

7.

S4: structure-based sequence alignments of SCOP superfamilies.

Casbon J, Saqi MA.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D219-22.

8.

Evolution of function in protein superfamilies, from a structural perspective.

Todd AE, Orengo CA, Thornton JM.

J Mol Biol. 2001 Apr 6;307(4):1113-43.

PMID:
11286560
9.

Towards an automatic classification of protein structural domains based on structural similarity.

Sam V, Tai CH, Garnier J, Gibrat JF, Lee B, Munson PJ.

BMC Bioinformatics. 2008 Jan 31;9:74. doi: 10.1186/1471-2105-9-74.

10.

fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.

Tung CH, Yang JM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W438-43. Epub 2007 May 7.

11.

PASS2: an automated database of protein alignments organised as structural superfamilies.

Bhaduri A, Pugalenthi G, Sowdhamini R.

BMC Bioinformatics. 2004 Apr 2;5:35.

12.

FuzzyART neural network for protein classification.

Angadi UB, Venkatesulu M.

J Bioinform Comput Biol. 2010 Oct;8(5):825-41.

PMID:
20981890
14.

SCOP database in 2002: refinements accommodate structural genomics.

Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2002 Jan 1;30(1):264-7.

15.

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

Gewehr JE, Hintermair V, Zimmer R.

Bioinformatics. 2007 May 15;23(10):1203-10. Epub 2007 Mar 22.

PMID:
17379694
16.

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.

Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J.

Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. doi: 10.1093/nar/gkn762. Epub 2008 Nov 26.

17.

The SUPERFAMILY database in 2007: families and functions.

Wilson D, Madera M, Vogel C, Chothia C, Gough J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D308-13. Epub 2006 Nov 10.

18.

An Integrated Framework for Functional Annotation of Protein Structural Domains.

Deng L, Chen Z.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):902-13. doi: 10.1109/TCBB.2015.2389213.

PMID:
26357331
20.

Automatic classification of protein structures using physicochemical parameters.

Mohan A, Rao MD, Sunderrajan S, Pennathur G.

Interdiscip Sci. 2014 Sep;6(3):176-86. doi: 10.1007/s12539-013-0199-0. Epub 2014 Sep 11.

PMID:
25205495

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