Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 105

1.

A physical, genetic and functional sequence assembly of the barley genome.

International Barley Genome Sequencing Consortium, Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N.

Nature. 2012 Nov 29;491(7426):711-6. doi: 10.1038/nature11543. Epub 2012 Oct 17.

2.

Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes.

Russell J, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.

New Phytol. 2011 Jul;191(2):564-78. doi: 10.1111/j.1469-8137.2011.03704.x. Epub 2011 Mar 28.

3.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N.

Plant Physiol. 2014 Jan;164(1):412-23. doi: 10.1104/pp.113.228213. Epub 2013 Nov 15.

4.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

5.

Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris).

Dohm JC, Lange C, Holtgräwe D, Sörensen TR, Borchardt D, Schulz B, Lehrach H, Weisshaar B, Himmelbauer H.

Plant J. 2012 May;70(3):528-40. doi: 10.1111/j.1365-313X.2011.04898.x. Epub 2012 Feb 14. Erratum in: Plant J. 2012 Jul;71(1):182.

6.

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.

7.

Gene content and virtual gene order of barley chromosome 1H.

Mayer KF, Taudien S, Martis M, Simková H, Suchánková P, Gundlach H, Wicker T, Petzold A, Felder M, Steuernagel B, Scholz U, Graner A, Platzer M, Dolezel J, Stein N.

Plant Physiol. 2009 Oct;151(2):496-505. doi: 10.1104/pp.109.142612. Epub 2009 Aug 19.

8.

Barley genetic variation: implications for crop improvement.

Muñoz-Amatriaín M, Cuesta-Marcos A, Hayes PM, Muehlbauer GJ.

Brief Funct Genomics. 2014 Jul;13(4):341-50. doi: 10.1093/bfgp/elu006. Epub 2014 Mar 22.

PMID:
24658880
9.

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Shoaei Z, Deal KR, Langridge P.

BMC Genomics. 2010 Jun 17;11:382. doi: 10.1186/1471-2164-11-382.

10.

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats.

Wicker T, Narechania A, Sabot F, Stein J, Vu GT, Graner A, Ware D, Stein N.

BMC Genomics. 2008 Oct 31;9:518. doi: 10.1186/1471-2164-9-518.

11.

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata.

Tiwari VK, Wang S, Danilova T, Koo DH, Vrána J, Kubaláková M, Hribova E, Rawat N, Kalia B, Singh N, Friebe B, Doležel J, Akhunov E, Poland J, Sabir JS, Gill BS.

Plant J. 2015 Nov;84(4):733-46. doi: 10.1111/tpj.13036.

12.

Effects of genome structure variation, homeologous genes and repetitive DNA on polyploid crop research in the age of genomics.

Fu D, Mason AS, Xiao M, Yan H.

Plant Sci. 2016 Jan;242:37-46. doi: 10.1016/j.plantsci.2015.09.017. Epub 2015 Sep 26. Review.

PMID:
26566823
13.

The international barley sequencing consortium--at the threshold of efficient access to the barley genome.

Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman AH, Waugh R, Wise RP, Stein N.

Plant Physiol. 2009 Jan;149(1):142-7. doi: 10.1104/pp.108.128967. No abstract available.

14.

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R.

Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10.

15.

Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae.

Mameaux S, Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Jack P, Werner P, Gray JC, Greenland AJ, Powell W.

Plant Biotechnol J. 2012 Jan;10(1):67-82. doi: 10.1111/j.1467-7652.2011.00645.x. Epub 2011 Aug 15.

16.

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

Schulte D, Ariyadasa R, Shi B, Fleury D, Saski C, Atkins M, deJong P, Wu CC, Graner A, Langridge P, Stein N.

BMC Genomics. 2011 May 19;12:247. doi: 10.1186/1471-2164-12-247.

17.

Analysis of the bread wheat genome using whole-genome shotgun sequencing.

Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N.

Nature. 2012 Nov 29;491(7426):705-10. doi: 10.1038/nature11650.

18.

Marker development and characterisation of Hordeum bulbosum introgression lines: a resource for barley improvement.

Johnston PA, Timmerman-Vaughan GM, Farnden KJ, Pickering R.

Theor Appl Genet. 2009 May;118(8):1429-37. doi: 10.1007/s00122-009-0992-7. Epub 2009 Mar 5.

PMID:
19263032
19.

Unlocking the secondary gene-pool of barley with next-generation sequencing.

Wendler N, Mascher M, Nöh C, Himmelbach A, Scholz U, Ruge-Wehling B, Stein N.

Plant Biotechnol J. 2014 Oct;12(8):1122-31. doi: 10.1111/pbi.12219. Epub 2014 Jul 6.

20.

Transcriptome profiling reveals mosaic genomic origins of modern cultivated barley.

Dai F, Chen ZH, Wang X, Li Z, Jin G, Wu D, Cai S, Wang N, Wu F, Nevo E, Zhang G.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13403-8. doi: 10.1073/pnas.1414335111. Epub 2014 Sep 2.

Supplemental Content

Support Center