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Items: 1 to 20 of 271

1.

Microbial culturomics: paradigm shift in the human gut microbiome study.

Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maraninchi M, Trape JF, Koonin EV, La Scola B, Raoult D.

Clin Microbiol Infect. 2012 Dec;18(12):1185-93. doi: 10.1111/1469-0691.12023. Epub 2012 Oct 3.

2.

The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics.

Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D.

Eur J Clin Microbiol Infect Dis. 2013 May;32(5):637-45. doi: 10.1007/s10096-012-1787-3. Epub 2013 Jan 6.

PMID:
23291779
3.

Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample.

Pfleiderer A, Lagier JC, Armougom F, Robert C, Vialettes B, Raoult D.

Eur J Clin Microbiol Infect Dis. 2013 Nov;32(11):1471-81. doi: 10.1007/s10096-013-1900-2. Epub 2013 Jun 2.

PMID:
23728738
4.

Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics.

Dubourg G, Lagier JC, Robert C, Armougom F, Hugon P, Metidji S, Dione N, Dangui NP, Pfleiderer A, Abrahao J, Musso D, Papazian L, Brouqui P, Bibi F, Yasir M, Vialettes B, Raoult D.

Int J Antimicrob Agents. 2014 Aug;44(2):117-24. doi: 10.1016/j.ijantimicag.2014.04.020. Epub 2014 Jun 14.

PMID:
25063078
5.

Metagenomics: key to human gut microbiota.

Maccaferri S, Biagi E, Brigidi P.

Dig Dis. 2011;29(6):525-30. doi: 10.1159/000332966. Epub 2011 Dec 12. Review.

PMID:
22179207
7.

Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing.

Tun HM, Brar MS, Khin N, Jun L, Hui RK, Dowd SE, Leung FC.

J Microbiol Methods. 2012 Mar;88(3):369-76. doi: 10.1016/j.mimet.2012.01.001. Epub 2012 Jan 12.

PMID:
22265636
8.

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.

9.

Comparative fecal metagenomics unveils unique functional capacity of the swine gut.

Lamendella R, Domingo JW, Ghosh S, Martinson J, Oerther DB.

BMC Microbiol. 2011 May 15;11:103. doi: 10.1186/1471-2180-11-103.

10.

Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment.

Bull-Otterson L, Feng W, Kirpich I, Wang Y, Qin X, Liu Y, Gobejishvili L, Joshi-Barve S, Ayvaz T, Petrosino J, Kong M, Barker D, McClain C, Barve S.

PLoS One. 2013;8(1):e53028. doi: 10.1371/journal.pone.0053028. Epub 2013 Jan 9.

11.

Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons.

Shepherd ML, Swecker WS Jr, Jensen RV, Ponder MA.

FEMS Microbiol Lett. 2012 Jan;326(1):62-8. doi: 10.1111/j.1574-6968.2011.02434.x. Epub 2011 Nov 2.

12.

Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov.

Mourembou G, Yasir M, Azhar EI, Lagier JC, Bibi F, Jiman-Fatani AA, Helmy N, Robert C, Rathored J, Fournier PE, Raoult D, Million M.

OMICS. 2015 Dec;19(12):766-76. doi: 10.1089/omi.2015.0143.

13.

Gastrointestinal microbiology enters the metagenomics era.

Frank DN, Pace NR.

Curr Opin Gastroenterol. 2008 Jan;24(1):4-10. Review.

PMID:
18043225
14.

Metagenomics and probiotics.

Gueimonde M, Collado MC.

Clin Microbiol Infect. 2012 Jul;18 Suppl 4:32-4. doi: 10.1111/j.1469-0691.2012.03873.x. Review.

15.

Culturomics: a new approach to study the human microbiome.

Greub G.

Clin Microbiol Infect. 2012 Dec;18(12):1157-9. doi: 10.1111/1469-0691.12032. No abstract available.

16.

Studying the human gut microbiota in the trans-omics era--focus on metagenomics and metabonomics.

Tuohy KM, Gougoulias C, Shen Q, Walton G, Fava F, Ramnani P.

Curr Pharm Des. 2009;15(13):1415-27. Review.

PMID:
19442166
17.

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults.

Rajilić-Stojanović M, Heilig HG, Molenaar D, Kajander K, Surakka A, Smidt H, de Vos WM.

Environ Microbiol. 2009 Jul;11(7):1736-51. doi: 10.1111/j.1462-2920.2009.01900.x. Epub 2009 Mar 11.

18.

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, Osterås M, Schrenzel J, François P.

J Microbiol Methods. 2009 Dec;79(3):266-71. doi: 10.1016/j.mimet.2009.09.012. Epub 2009 Sep 29.

19.

Culture of previously uncultured members of the human gut microbiota by culturomics.

Lagier JC, Khelaifia S, Alou MT, Ndongo S, Dione N, Hugon P, Caputo A, Cadoret F, Traore SI, Seck EH, Dubourg G, Durand G, Mourembou G, Guilhot E, Togo A, Bellali S, Bachar D, Cassir N, Bittar F, Delerce J, Mailhe M, Ricaboni D, Bilen M, Dangui Nieko NP, Dia Badiane NM, Valles C, Mouelhi D, Diop K, Million M, Musso D, Abrahão J, Azhar EI, Bibi F, Yasir M, Diallo A, Sokhna C, Djossou F, Vitton V, Robert C, Rolain JM, La Scola B, Fournier PE, Levasseur A, Raoult D.

Nat Microbiol. 2016 Nov 7;1:16203. doi: 10.1038/nmicrobiol.2016.203.

PMID:
27819657
20.

A core gut microbiome in obese and lean twins.

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI.

Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540. Epub 2008 Nov 30.

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