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Global assessment of genomic regions required for growth in Mycobacterium tuberculosis.

Zhang YJ, Ioerger TR, Huttenhower C, Long JE, Sassetti CM, Sacchettini JC, Rubin EJ.

PLoS Pathog. 2012 Sep;8(9):e1002946. doi: 10.1371/journal.ppat.1002946. Epub 2012 Sep 27. Erratum in: PLoS Pathog. 2013;9(7). doi:10.1371/annotation/4669e9e7-fd12-4a01-be2a-617b956ec0bb.


Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis.

McGuire AM, Weiner B, Park ST, Wapinski I, Raman S, Dolganov G, Peterson M, Riley R, Zucker J, Abeel T, White J, Sisk P, Stolte C, Koehrsen M, Yamamoto RT, Iacobelli-Martinez M, Kidd MJ, Maer AM, Schoolnik GK, Regev A, Galagan J.

BMC Genomics. 2012 Mar 28;13:120. doi: 10.1186/1471-2164-13-120.


Whole genome sequencing reveals genomic heterogeneity and antibiotic purification in Mycobacterium tuberculosis isolates.

Black PA, de Vos M, Louw GE, van der Merwe RG, Dippenaar A, Streicher EM, Abdallah AM, Sampson SL, Victor TC, Dolby T, Simpson JA, van Helden PD, Warren RM, Pain A.

BMC Genomics. 2015 Oct 24;16:857. doi: 10.1186/s12864-015-2067-2.


Genome-wide definition of the SigF regulon in Mycobacterium tuberculosis.

Hartkoorn RC, Sala C, Uplekar S, Busso P, Rougemont J, Cole ST.

J Bacteriol. 2012 Apr;194(8):2001-9. doi: 10.1128/JB.06692-11. Epub 2012 Feb 3.


High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.

Uplekar S, Rougemont J, Cole ST, Sala C.

Nucleic Acids Res. 2013 Jan;41(2):961-77. doi: 10.1093/nar/gks1260. Epub 2012 Dec 7.


The mycobacterial PhoH2 proteins are type II toxin antitoxins coupled to RNA helicase domains.

Andrews ES, Arcus VL.

Tuberculosis (Edinb). 2015 Jul;95(4):385-94. doi: 10.1016/ Epub 2015 Apr 16.


cDNA-RNA subtractive hybridization reveals increased expression of mycocerosic acid synthase in intracellular Mycobacterium bovis BCG.

Li MS, Monahan IM, Waddell SJ, Mangan JA, Martin SL, Everett MJ, Butcher PD.

Microbiology. 2001 Aug;147(Pt 8):2293-305.


Comparative genomics of the mycobacteria.

Brosch R, Gordon SV, Pym A, Eiglmeier K, Garnier T, Cole ST.

Int J Med Microbiol. 2000 May;290(2):143-52. Review.


Microarray analysis of defined Mycobacterium tuberculosis populations using RNA amplification strategies.

Waddell SJ, Laing K, Senner C, Butcher PD.

BMC Genomics. 2008 Feb 25;9:94. doi: 10.1186/1471-2164-9-94.


An automated approach for global identification of sRNA-encoding regions in RNA-Seq data from Mycobacterium tuberculosis.

Wang M, Fleming J, Li Z, Li C, Zhang H, Xue Y, Chen M, Zhang Z, Zhang XE, Bi L.

Acta Biochim Biophys Sin (Shanghai). 2016 Jun;48(6):544-53. doi: 10.1093/abbs/gmw037. Epub 2016 May 12.


Mycobacterial bacilli are metabolically active during chronic tuberculosis in murine lungs: insights from genome-wide transcriptional profiling.

Talaat AM, Ward SK, Wu CW, Rondon E, Tavano C, Bannantine JP, Lyons R, Johnston SA.

J Bacteriol. 2007 Jun;189(11):4265-74. Epub 2007 Mar 23.


The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis.

Solans L, Gonzalo-Asensio J, Sala C, Benjak A, Uplekar S, Rougemont J, Guilhot C, Malaga W, Martín C, Cole ST.

PLoS Pathog. 2014 May 29;10(5):e1004183. doi: 10.1371/journal.ppat.1004183. eCollection 2014 May.


Royal Society of Tropical Medicine and Hygiene Meeting at Manson House, London, 18th January 2001. Pathogen genomes and human health. Mycobacterial genomics.

Gordon SV, Brosch R, Eiglmeier K, Garnier T, Hewinson RG, Cole ST.

Trans R Soc Trop Med Hyg. 2002 Jan-Feb;96(1):1-6.


A genome-wide regulator-DNA interaction network in the human pathogen Mycobacterium tuberculosis H37Rv.

Zeng J, Cui T, He ZG.

J Proteome Res. 2012 Sep 7;11(9):4682-92. doi: 10.1021/pr3006233. Epub 2012 Aug 10.


Genes required for mycobacterial growth defined by high density mutagenesis.

Sassetti CM, Boyd DH, Rubin EJ.

Mol Microbiol. 2003 Apr;48(1):77-84.


Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.

Camus JC, Pryor MJ, Médigue C, Cole ST.

Microbiology. 2002 Oct;148(Pt 10):2967-73.


Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis.

Arnvig KB, Comas I, Thomson NR, Houghton J, Boshoff HI, Croucher NJ, Rose G, Perkins TT, Parkhill J, Dougan G, Young DB.

PLoS Pathog. 2011 Nov;7(11):e1002342. doi: 10.1371/journal.ppat.1002342. Epub 2011 Nov 3.


Identification of novel intergenic repetitive units in a mycobacterial two-component system operon.

Supply P, Magdalena J, Himpens S, Locht C.

Mol Microbiol. 1997 Dec;26(5):991-1003.

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