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Items: 1 to 20 of 63

1.

The human transcriptome: an unfinished story.

Pertea M.

Genes (Basel). 2012 Sep;3(3):344-60. doi: 10.3390/genes3030344.

2.

A meta-analysis of the genomic and transcriptomic composition of complex life.

Liu G, Mattick JS, Taft RJ.

Cell Cycle. 2013 Jul 1;12(13):2061-72. doi: 10.4161/cc.25134. Epub 2013 Jun 6.

3.

Finding the active genes in deep RNA-seq gene expression studies.

Hart T, Komori HK, LaMere S, Podshivalova K, Salomon DR.

BMC Genomics. 2013 Nov 11;14:778. doi: 10.1186/1471-2164-14-778.

4.

Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome.

Chen C, Bundschuh R.

BMC Genomics. 2012 Nov 13;13:616. doi: 10.1186/1471-2164-13-616.

5.

Genome-wide impact of endogenous antisense transcripts in eukaryotes.

Numata K, Kiyosawa H.

Front Biosci (Landmark Ed). 2012 Jan 1;17:300-15. Review.

PMID:
22201745
6.

Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?

Guimarães AO, Motta FL, Alves VS, Castilho BA, Pesquero JB.

BMC Mol Biol. 2009 Feb 8;10:7. doi: 10.1186/1471-2199-10-7.

7.

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.

Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E, Liu Z.

BMC Genomics. 2012 Nov 5;13:595. doi: 10.1186/1471-2164-13-595.

8.

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.

Wu JQ, Du J, Rozowsky J, Zhang Z, Urban AE, Euskirchen G, Weissman S, Gerstein M, Snyder M.

Genome Biol. 2008 Jan 3;9(1):R3. doi: 10.1186/gb-2008-9-1-r3.

9.
10.

Constructing the landscape of the mammalian transcriptome.

Carninci P.

J Exp Biol. 2007 May;210(Pt 9):1497-506.

11.

Evolution of the unspliced transcriptome.

Engelhardt J, Stadler PF.

BMC Evol Biol. 2015 Aug 20;15:166. doi: 10.1186/s12862-015-0437-7.

12.

Identification of RNA polymerase III-transcribed genes in eukaryotic genomes.

Dieci G, Conti A, Pagano A, Carnevali D.

Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):296-305. doi: 10.1016/j.bbagrm.2012.09.010. Epub 2012 Oct 2. Review.

PMID:
23041497
13.

RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.

Tan MH, Au KF, Yablonovitch AL, Wills AE, Chuang J, Baker JC, Wong WH, Li JB.

Genome Res. 2013 Jan;23(1):201-16. doi: 10.1101/gr.141424.112. Epub 2012 Sep 7.

14.
15.

Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria.

Porcelli I, Reuter M, Pearson BM, Wilhelm T, van Vliet AH.

BMC Genomics. 2013 Sep 12;14:616. doi: 10.1186/1471-2164-14-616.

16.

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.

Pal S, Gupta R, Kim H, Wickramasinghe P, Baubet V, Showe LC, Dahmane N, Davuluri RV.

Genome Res. 2011 Aug;21(8):1260-72. doi: 10.1101/gr.120535.111. Epub 2011 Jun 28.

17.

In the Driver's Seat: The Case for Transcriptional Regulation and Coupling as Relevant Determinants of the Circadian Transcriptome and Proteome in Eukaryotes.

Montenegro-Montero A, Larrondo LF.

J Biol Rhythms. 2016 Feb;31(1):37-47. doi: 10.1177/0748730415607321. Epub 2015 Oct 7.

PMID:
26446874
18.

Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome.

Kashi K, Henderson L, Bonetti A, Carninci P.

Biochim Biophys Acta. 2016 Jan;1859(1):3-15. doi: 10.1016/j.bbagrm.2015.10.010. Epub 2015 Oct 23. Review.

19.

Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals.

Ju YS, Kim JI, Kim S, Hong D, Park H, Shin JY, Lee S, Lee WC, Kim S, Yu SB, Park SS, Seo SH, Yun JY, Kim HJ, Lee DS, Yavartanoo M, Kang HP, Gokcumen O, Govindaraju DR, Jung JH, Chong H, Yang KS, Kim H, Lee C, Seo JS.

Nat Genet. 2011 Jul 3;43(8):745-52. doi: 10.1038/ng.872.

PMID:
21725310
20.

Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence.

Góngora-Castillo E, Buell CR.

Nat Prod Rep. 2013 Apr;30(4):490-500. doi: 10.1039/c3np20099j. Review.

PMID:
23377493

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