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Proteomics strategy to identify substrates of LNX, a PDZ domain-containing E3 ubiquitin ligase.

Guo Z, Song E, Ma S, Wang X, Gao S, Shao C, Hu S, Jia L, Tian R, Xu T, Gao Y.

J Proteome Res. 2012 Oct 5;11(10):4847-62. doi: 10.1021/pr300674c. Epub 2012 Aug 29.


Molecular evolution of the LNX gene family.

Flynn M, Saha O, Young P.

BMC Evol Biol. 2011 Aug 9;11:235. doi: 10.1186/1471-2148-11-235.


Proteomic analysis reveals novel ligands and substrates for LNX1 E3 ubiquitin ligase.

Lenihan JA, Saha O, Young PW.

PLoS One. 2017 Nov 9;12(11):e0187352. doi: 10.1371/journal.pone.0187352. eCollection 2017.


Screening E3 substrates using a live phage display library.

Guo Z, Wang X, Li H, Gao Y.

PLoS One. 2013 Oct 4;8(10):e76622. doi: 10.1371/journal.pone.0076622. eCollection 2013.


Human proteome-scale structural modeling of E2-E3 interactions exploiting interface motifs.

Kar G, Keskin O, Nussinov R, Gursoy A.

J Proteome Res. 2012 Feb 3;11(2):1196-207. doi: 10.1021/pr2009143. Epub 2012 Jan 10.


Design Principles Involving Protein Disorder Facilitate Specific Substrate Selection and Degradation by the Ubiquitin-Proteasome System.

Guharoy M, Bhowmick P, Tompa P.

J Biol Chem. 2016 Mar 25;291(13):6723-31. doi: 10.1074/jbc.R115.692665. Epub 2016 Feb 5. Review.


Dynamic interactions of proteins in complex networks: identifying the complete set of interacting E2s for functional investigation of E3-dependent protein ubiquitination.

Christensen DE, Klevit RE.

FEBS J. 2009 Oct;276(19):5381-9. doi: 10.1111/j.1742-4658.2009.07249.x. Epub 2009 Aug 27. Review.


Substrates of IAP ubiquitin ligases identified with a designed orthogonal E3 ligase, the NEDDylator.

Zhuang M, Guan S, Wang H, Burlingame AL, Wells JA.

Mol Cell. 2013 Jan 24;49(2):273-82. doi: 10.1016/j.molcel.2012.10.022. Epub 2012 Nov 29.


The ubiquitin-interacting motif protein, S5a, is ubiquitinated by all types of ubiquitin ligases by a mechanism different from typical substrate recognition.

Uchiki T, Kim HT, Zhai B, Gygi SP, Johnston JA, O'Bryan JP, Goldberg AL.

J Biol Chem. 2009 May 8;284(19):12622-32. doi: 10.1074/jbc.M900556200. Epub 2009 Feb 24.


Establishment of a Wheat Cell-Free Synthesized Protein Array Containing 250 Human and Mouse E3 Ubiquitin Ligases to Identify Novel Interaction between E3 Ligases and Substrate Proteins.

Takahashi H, Uematsu A, Yamanaka S, Imamura M, Nakajima T, Doi K, Yasuoka S, Takahashi C, Takeda H, Sawasaki T.

PLoS One. 2016 Jun 1;11(6):e0156718. doi: 10.1371/journal.pone.0156718. eCollection 2016.


LNX functions as a RING type E3 ubiquitin ligase that targets the cell fate determinant Numb for ubiquitin-dependent degradation.

Nie J, McGill MA, Dermer M, Dho SE, Wolting CD, McGlade CJ.

EMBO J. 2002 Jan 15;21(1-2):93-102.


E3 ubiquitin ligases.

Ardley HC, Robinson PA.

Essays Biochem. 2005;41:15-30. Review.


Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast.

Gupta R, Kus B, Fladd C, Wasmuth J, Tonikian R, Sidhu S, Krogan NJ, Parkinson J, Rotin D.

Mol Syst Biol. 2007;3:116. Epub 2007 Jun 5.


Biochemical and computational analysis of LNX1 interacting proteins.

Wolting CD, Griffiths EK, Sarao R, Prevost BC, Wybenga-Groot LE, McGlade CJ.

PLoS One. 2011;6(11):e26248. doi: 10.1371/journal.pone.0026248. Epub 2011 Nov 8.


Novel Cul3 binding proteins function to remodel E3 ligase complexes.

Wimuttisuk W, West M, Davidge B, Yu K, Salomon A, Singer JD.

BMC Cell Biol. 2014 Jul 10;15:28. doi: 10.1186/1471-2121-15-28.


c-Src is a PDZ interaction partner and substrate of the E3 ubiquitin ligase Ligand-of-Numb protein X1.

Weiss A, Baumgartner M, Radziwill G, Dennler J, Moelling K.

FEBS Lett. 2007 Oct 30;581(26):5131-6. Epub 2007 Oct 8.


RING domain E3 ubiquitin ligases.

Deshaies RJ, Joazeiro CA.

Annu Rev Biochem. 2009;78:399-434. doi: 10.1146/annurev.biochem.78.101807.093809. Review.


Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases.

Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA.

Mol Cell. 2009 Oct 9;36(1):39-50. doi: 10.1016/j.molcel.2009.09.022.


Use of proteome arrays to globally identify substrates for E3 ubiquitin ligases.

Persaud A, Rotin D.

Methods Mol Biol. 2011;759:215-24. doi: 10.1007/978-1-61779-173-4_13.


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