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Items: 1 to 20 of 100

1.

Genome-wide detection of spontaneous chromosomal rearrangements in bacteria.

Sun S, Ke R, Hughes D, Nilsson M, Andersson DI.

PLoS One. 2012;7(8):e42639. doi: 10.1371/journal.pone.0042639. Epub 2012 Aug 3.

2.

The genome of Salmonella enterica serovar gallinarum: distinct insertions/deletions and rare rearrangements.

Wu KY, Liu GR, Liu WQ, Wang AQ, Zhan S, Sanderson KE, Johnston RN, Liu SL.

J Bacteriol. 2005 Jul;187(14):4720-7.

3.

Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli.

Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D.

MBio. 2014 Sep 9;5(5):e01377-14. doi: 10.1128/mBio.01377-14.

4.

The tandem inversion duplication in Salmonella enterica: selection drives unstable precursors to final mutation types.

Kugelberg E, Kofoid E, Andersson DI, Lu Y, Mellor J, Roth FP, Roth JR.

Genetics. 2010 May;185(1):65-80. doi: 10.1534/genetics.110.114074. Epub 2010 Mar 9.

5.

Repeated sequences in bacterial chromosomes and plasmids: a glimpse from sequenced genomes.

Romero D, Martínez-Salazar J, Ortiz E, Rodríguez C, Valencia-Morales E.

Res Microbiol. 1999 Nov-Dec;150(9-10):735-43. Review.

PMID:
10673011
6.

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus.

Ogier JC, Calteau A, Forst S, Goodrich-Blair H, Roche D, Rouy Z, Suen G, Zumbihl R, Givaudan A, Tailliez P, Médigue C, Gaudriault S.

BMC Genomics. 2010 Oct 15;11:568. doi: 10.1186/1471-2164-11-568.

7.

Evolution of multi-gene segments in the mutS-rpoS intergenic region of Salmonella enterica serovar Typhimurium LT2.

Kotewicz ML, Li B, Levy DD, LeClerc JE, Shifflet AW, Cebula TA.

Microbiology. 2002 Aug;148(Pt 8):2531-40.

PMID:
12177346
8.

Genome rearrangements can make and break small RNA genes.

Raghavan R, Kacharia FR, Millar JA, Sislak CD, Ochman H.

Genome Biol Evol. 2015 Jan 18;7(2):557-66. doi: 10.1093/gbe/evv009.

9.

Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing.

Skovgaard O, Bak M, Løbner-Olesen A, Tommerup N.

Genome Res. 2011 Aug;21(8):1388-93. doi: 10.1101/gr.117416.110. Epub 2011 May 9.

10.

Selection-driven gene loss in bacteria.

Koskiniemi S, Sun S, Berg OG, Andersson DI.

PLoS Genet. 2012 Jun;8(6):e1002787. doi: 10.1371/journal.pgen.1002787. Epub 2012 Jun 28.

11.

Genome rearrangements in maize induced by alternative transposition of reversed ac/ds termini.

Yu C, Zhang J, Peterson T.

Genetics. 2011 May;188(1):59-67. doi: 10.1534/genetics.111.126847. Epub 2011 Feb 21.

12.

Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi.

McClelland M, Florea L, Sanderson K, Clifton SW, Parkhill J, Churcher C, Dougan G, Wilson RK, Miller W.

Nucleic Acids Res. 2000 Dec 15;28(24):4974-86.

13.

Rearrangements in the genome of the bacterium Salmonella typhi.

Liu SL, Sanderson KE.

Proc Natl Acad Sci U S A. 1995 Feb 14;92(4):1018-22.

15.

Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome.

Izumiya H, Sekizuka T, Nakaya H, Taguchi M, Oguchi A, Ichikawa N, Nishiko R, Yamazaki S, Fujita N, Watanabe H, Ohnishi M, Kuroda M.

Antimicrob Agents Chemother. 2011 Feb;55(2):623-30. doi: 10.1128/AAC.01215-10. Epub 2010 Nov 22.

16.

Birth and death of genes linked to chromosomal inversion.

Furuta Y, Kawai M, Yahara K, Takahashi N, Handa N, Tsuru T, Oshima K, Yoshida M, Azuma T, Hattori M, Uchiyama I, Kobayashi I.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1501-6. doi: 10.1073/pnas.1012579108. Epub 2011 Jan 6.

17.

Order and disorder in bacterial genomes.

Rocha EP.

Curr Opin Microbiol. 2004 Oct;7(5):519-27. Review.

PMID:
15451508
18.

Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes.

Hughes D.

Genome Biol. 2000;1(6):REVIEWS0006. Epub 2000 Dec 8. Review.

19.

sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes.

Sridhar J, Sambaturu N, Sabarinathan R, Ou HY, Deng Z, Sekar K, Rafi ZA, Rajakumar K.

PLoS One. 2010 Aug 5;5(8):e11970. doi: 10.1371/journal.pone.0011970. Erratum in: PLoS One. 2010;5(9). doi: 10.1371/annotation/71408e55-e1d3-4950-9c3b-d3a3ad66a1ff. Narmada, Suryanarayanan Ramkumar [corrected to Sambaturu, Narmada].

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