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Items: 1 to 20 of 181


The "most wanted" taxa from the human microbiome for whole genome sequencing.

Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM.

PLoS One. 2012;7(7):e41294. doi: 10.1371/journal.pone.0041294. Epub 2012 Jul 26.


Capturing the most wanted taxa through cross-sample correlations.

Almeida M, Pop M, Le Chatelier E, Prifti E, Pons N, Ghozlane A, Ehrlich SD.

ISME J. 2016 Oct;10(10):2459-67. doi: 10.1038/ismej.2016.35. Epub 2016 Mar 4.


The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information.

Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE.

Database (Oxford). 2010 Jul 6;2010:baq013. doi: 10.1093/database/baq013.


Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.

Ranjan R, Rani A, Metwally A, McGee HS, Perkins DL.

Biochem Biophys Res Commun. 2016 Jan 22;469(4):967-77. doi: 10.1016/j.bbrc.2015.12.083. Epub 2015 Dec 22.


Determining the culturability of the rumen bacterial microbiome.

Creevey CJ, Kelly WJ, Henderson G, Leahy SC.

Microb Biotechnol. 2014 Sep;7(5):467-79. doi: 10.1111/1751-7915.12141. Epub 2014 Jul 1.


Species-level classification of the vaginal microbiome.

Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, Jefferson KK; Vaginal Microbiome Consortium (additional members), Buck GA.

BMC Genomics. 2012;13 Suppl 8:S17. doi: 10.1186/1471-2164-13-S8-S17. Epub 2012 Dec 17.


Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison.

Ahn J, Yang L, Paster BJ, Ganly I, Morris L, Pei Z, Hayes RB.

PLoS One. 2011;6(7):e22788. doi: 10.1371/journal.pone.0022788. Epub 2011 Jul 29.


Species-level analysis of DNA sequence data from the NIH Human Microbiome Project.

Conlan S, Kong HH, Segre JA.

PLoS One. 2012;7(10):e47075. doi: 10.1371/journal.pone.0047075. Epub 2012 Oct 10.


Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform.

Dassi E, Ballarini A, Covello G; HTM-CMB2013, Quattrone A, Jousson O, De Sanctis V, Bertorelli R, Denti MA, Segata N.

J Biotechnol. 2014 Nov 20;190:30-9. doi: 10.1016/j.jbiotec.2014.03.024. Epub 2014 Mar 23.


The human oral microbiome.

Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG.

J Bacteriol. 2010 Oct;192(19):5002-17. doi: 10.1128/JB.00542-10. Epub 2010 Jul 23.


Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome.

Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, Brodie EL, Malamud D, Poles MA, Pei Z.

World J Gastroenterol. 2010 Sep 7;16(33):4135-44.


A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE.

PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10.


High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.


Diversity of 16S rRNA genes within individual prokaryotic genomes.

Pei AY, Oberdorf WE, Nossa CW, Agarwal A, Chokshi P, Gerz EA, Jin Z, Lee P, Yang L, Poles M, Brown SM, Sotero S, Desantis T, Brodie E, Nelson K, Pei Z.

Appl Environ Microbiol. 2010 Jun;76(12):3886-97. doi: 10.1128/AEM.02953-09. Epub 2010 Apr 23. Erratum in: Appl Environ Microbiol. 2010 Aug;76(15):5333.


Diversity of bacteria at healthy human conjunctiva.

Dong Q, Brulc JM, Iovieno A, Bates B, Garoutte A, Miller D, Revanna KV, Gao X, Antonopoulos DA, Slepak VZ, Shestopalov VI.

Invest Ophthalmol Vis Sci. 2011 Jul 20;52(8):5408-13. doi: 10.1167/iovs.10-6939.


Microbial co-occurrence relationships in the human microbiome.

Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C.

PLoS Comput Biol. 2012;8(7):e1002606. doi: 10.1371/journal.pcbi.1002606. Epub 2012 Jul 12.


Analyses of the stability and core taxonomic memberships of the human microbiome.

Li K, Bihan M, Methé BA.

PLoS One. 2013 May 6;8(5):e63139. doi: 10.1371/journal.pone.0063139. Print 2013.


Endometrial microbiome at the time of embryo transfer: next-generation sequencing of the 16S ribosomal subunit.

Franasiak JM, Werner MD, Juneau CR, Tao X, Landis J, Zhan Y, Treff NR, Scott RT.

J Assist Reprod Genet. 2016 Jan;33(1):129-36. doi: 10.1007/s10815-015-0614-z. Epub 2015 Nov 7.


Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs.

Lowe BA, Marsh TL, Isaacs-Cosgrove N, Kirkwood RN, Kiupel M, Mulks MH.

BMC Microbiol. 2012 Feb 7;12:20. doi: 10.1186/1471-2180-12-20.


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