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Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.

Horton JR, Mabuchi MY, Cohen-Karni D, Zhang X, Griggs RM, Samaranayake M, Roberts RJ, Zheng Y, Cheng X.

Nucleic Acids Res. 2012 Oct;40(19):9763-73. doi: 10.1093/nar/gks719. Epub 2012 Jul 30.


Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI.

Horton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X.

Sci Rep. 2014 Mar 7;4:4246. doi: 10.1038/srep04246.


Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.

Horton JR, Wang H, Mabuchi MY, Zhang X, Roberts RJ, Zheng Y, Wilson GG, Cheng X.

Nucleic Acids Res. 2014 Oct 29;42(19):12092-101. doi: 10.1093/nar/gku871. Epub 2014 Sep 27.


A unique family of Mrr-like modification-dependent restriction endonucleases.

Zheng Y, Cohen-Karni D, Xu D, Chin HG, Wilson G, Pradhan S, Roberts RJ.

Nucleic Acids Res. 2010 Sep;38(16):5527-34. doi: 10.1093/nar/gkq327. Epub 2010 May 5.


Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X.

Nucleic Acids Res. 2014 Jul;42(12):7947-59. doi: 10.1093/nar/gku497. Epub 2014 Jun 3.


Structure-guided sequence specificity engineering of the modification-dependent restriction endonuclease LpnPI.

Sasnauskas G, Zagorskaitė E, Kauneckaitė K, Tamulaitiene G, Siksnys V.

Nucleic Acids Res. 2015 Jul 13;43(12):6144-55. doi: 10.1093/nar/gkv548. Epub 2015 May 22.


Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine.

Wang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y.

Nucleic Acids Res. 2011 Nov;39(21):9294-305. doi: 10.1093/nar/gkr607. Epub 2011 Aug 3.


Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structure-stability-function correlations.

Zaremba M, Sasnauskas G, Urbanke C, Siksnys V.

J Mol Biol. 2005 Apr 29;348(2):459-78.


Mva1269I: a monomeric type IIS restriction endonuclease from Micrococcus varians with two EcoRI- and FokI-like catalytic domains.

Armalyte E, Bujnicki JM, Giedriene J, Gasiunas G, Kosiński J, Lubys A.

J Biol Chem. 2005 Dec 16;280(50):41584-94. Epub 2005 Oct 11.


Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium.

Sapranauskas R, Sasnauskas G, Lagunavicius A, Vilkaitis G, Lubys A, Siksnys V.

J Biol Chem. 2000 Oct 6;275(40):30878-85.


Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA.

Tamulaitiene G, Jovaisaite V, Tamulaitis G, Songailiene I, Manakova E, Zaremba M, Grazulis S, Xu SY, Siksnys V.

Nucleic Acids Res. 2017 Apr 7;45(6):3547-3558. doi: 10.1093/nar/gkw1310.


Chemical display of pyrimidine bases flipped out by modification-dependent restriction endonucleases of MspJI and PvuRts1I families.

Zagorskaitė E, Sasnauskas G.

PLoS One. 2014 Dec 8;9(12):e114580. doi: 10.1371/journal.pone.0114580. eCollection 2014.


Characterization of AloI, a restriction-modification system of a new type.

Cesnaviciene E, Petrusyte M, Kazlauskiene R, Maneliene Z, Timinskas A, Lubys A, Janulaitis A.

J Mol Biol. 2001 Nov 23;314(2):205-16.


Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA.

Deibert M, Grazulis S, Sasnauskas G, Siksnys V, Huber R.

Nat Struct Biol. 2000 Sep;7(9):792-9.


Functional significance of protein assemblies predicted by the crystal structure of the restriction endonuclease BsaWI.

Tamulaitis G, Rutkauskas M, Zaremba M, Grazulis S, Tamulaitiene G, Siksnys V.

Nucleic Acids Res. 2015 Sep 18;43(16):8100-10. doi: 10.1093/nar/gkv768. Epub 2015 Aug 3.


The nicking endonuclease N.BstNBI is closely related to type IIs restriction endonucleases MlyI and PleI.

Higgins LS, Besnier C, Kong H.

Nucleic Acids Res. 2001 Jun 15;29(12):2492-501.


DNA cleavage by Type ISP Restriction-Modification enzymes is initially targeted to the 3'-5' strand.

van Aelst K, Šišáková E, Szczelkun MD.

Nucleic Acids Res. 2013 Jan;41(2):1081-90. doi: 10.1093/nar/gks1210. Epub 2012 Dec 5.


Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family.

Zylicz-Stachula A, Bujnicki JM, Skowron PM.

BMC Mol Biol. 2009 May 29;10:52. doi: 10.1186/1471-2199-10-52. Erratum in: BMC Mol Biol. 2014;15:16.


Subunit assembly for DNA cleavage by restriction endonuclease SgrAI.

Daniels LE, Wood KM, Scott DJ, Halford SE.

J Mol Biol. 2003 Mar 28;327(3):579-91.


Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease.

Shao C, Wang C, Zang J.

Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2477-86. doi: 10.1107/S139900471401606X. Epub 2014 Aug 29.

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