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Items: 1 to 20 of 233

1.

Modular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneity.

Miller M, Hafner M, Sontag E, Davidsohn N, Subramanian S, Purnick PE, Lauffenburger D, Weiss R.

PLoS Comput Biol. 2012;8(7):e1002579. doi: 10.1371/journal.pcbi.1002579. Epub 2012 Jul 19.

2.

From noise to synthetic nucleoli: can synthetic biology achieve new insights?

Ciechonska M, Grob A, Isalan M.

Integr Biol (Camb). 2016 Apr 18;8(4):383-93. doi: 10.1039/c5ib00271k. Epub 2016 Jan 11. Review.

PMID:
26751735
3.

Synthetic circuits, devices and modules.

Zhang H, Jiang T.

Protein Cell. 2010 Nov;1(11):974-8. doi: 10.1007/s13238-010-0133-8. Epub 2010 Dec 10. Review.

4.

Robust design of biological circuits: evolutionary systems biology approach.

Chen BS, Hsu CY, Liou JJ.

J Biomed Biotechnol. 2011;2011:304236. doi: 10.1155/2011/304236. Epub 2011 Dec 7.

5.
6.

Design of computational retrobiosynthesis tools for the design of de novo synthetic pathways.

Hadadi N, Hatzimanikatis V.

Curr Opin Chem Biol. 2015 Oct;28:99-104. doi: 10.1016/j.cbpa.2015.06.025. Epub 2015 Jul 11. Review.

7.

Synthetic biology: integrated gene circuits.

Nandagopal N, Elowitz MB.

Science. 2011 Sep 2;333(6047):1244-8. doi: 10.1126/science.1207084. Review.

8.

Modular composition of gene transcription networks.

Gyorgy A, Del Vecchio D.

PLoS Comput Biol. 2014 Mar 13;10(3):e1003486. doi: 10.1371/journal.pcbi.1003486. eCollection 2014 Mar.

9.

Dynamic modeling of cellular populations within iBioSim.

Stevens JT, Myers CJ.

ACS Synth Biol. 2013 May 17;2(5):223-9. doi: 10.1021/sb300082b. Epub 2012 Nov 29.

PMID:
23654252
10.

Modelling the effects of cell-to-cell variability on the output of interconnected gene networks in bacterial populations.

Politi N, Pasotti L, Zucca S, Magni P.

BMC Syst Biol. 2015;9 Suppl 3:S6. doi: 10.1186/1752-0509-9-S3-S6. Epub 2015 Jun 1.

11.

Engineering molecular circuits using synthetic biology in mammalian cells.

Wieland M, Fussenegger M.

Annu Rev Chem Biomol Eng. 2012;3:209-34. doi: 10.1146/annurev-chembioeng-061010-114145. Epub 2012 Mar 29. Review.

PMID:
22468602
12.

A synthetic biology approach to understanding cellular information processing.

Riccione KA, Smith RP, Lee AJ, You L.

ACS Synth Biol. 2012 Sep 21;1(9):389-402. Review.

13.

Reverse engineering module networks by PSO-RNN hybrid modeling.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S15. doi: 10.1186/1471-2164-10-S1-S15.

14.

A non-homogeneous dynamic Bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology.

Grzegorczyk M, Husmeier D.

Stat Appl Genet Mol Biol. 2012 Jul 12;11(4). pii: /j/sagmb.2012.11.issue-4/1544-6115.1761/1544-6115.1761.xml. doi: 10.1515/1544-6115.1761.

PMID:
22850067
15.

Predicting synthetic gene networks.

di Bernardo D, Marucci L, Menolascina F, Siciliano V.

Methods Mol Biol. 2012;813:57-81. doi: 10.1007/978-1-61779-412-4_4.

PMID:
22083736
16.

Combined model of intrinsic and extrinsic variability for computational network design with application to synthetic biology.

Toni T, Tidor B.

PLoS Comput Biol. 2013;9(3):e1002960. doi: 10.1371/journal.pcbi.1002960. Epub 2013 Mar 28.

17.

Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors.

Rodrigo G, Carrera J, Jaramillo A.

Nucleic Acids Res. 2011 Nov 1;39(20):e138. doi: 10.1093/nar/gkr616. Epub 2011 Aug 24.

18.

Design specifications for cellular regulation.

Krakauer DC, Müller L, Prohaska SJ, Stadler PF.

Theory Biosci. 2016 Dec;135(4):231-240. Epub 2016 Nov 18.

PMID:
27864730
19.

Design and connection of robust genetic circuits.

Randall A, Guye P, Gupta S, Duportet X, Weiss R.

Methods Enzymol. 2011;497:159-86. doi: 10.1016/B978-0-12-385075-1.00007-X. Review.

PMID:
21601086
20.

Synthetic in vitro transcriptional oscillators.

Kim J, Winfree E.

Mol Syst Biol. 2011 Feb 1;7:465. doi: 10.1038/msb.2010.119.

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