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Items: 1 to 20 of 160

1.

Microbial co-occurrence relationships in the human microbiome.

Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C.

PLoS Comput Biol. 2012;8(7):e1002606. doi: 10.1371/journal.pcbi.1002606. Epub 2012 Jul 12.

2.

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.

Zhou J, Deng Y, Luo F, He Z, Yang Y.

MBio. 2011 Jul 26;2(4). pii: e00122-11. doi: 10.1128/mBio.00122-11. Print 2011.

3.

Analyses of the stability and core taxonomic memberships of the human microbiome.

Li K, Bihan M, Methé BA.

PLoS One. 2013 May 6;8(5):e63139. doi: 10.1371/journal.pone.0063139. Print 2013.

4.

Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities.

Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE.

PLoS One. 2010 Nov 12;5(11):e13963. doi: 10.1371/journal.pone.0013963.

5.

Species-level analysis of DNA sequence data from the NIH Human Microbiome Project.

Conlan S, Kong HH, Segre JA.

PLoS One. 2012;7(10):e47075. doi: 10.1371/journal.pone.0047075. Epub 2012 Oct 10.

6.

Microbial diversity and interactions in subgingival biofilm communities.

Diaz PI.

Front Oral Biol. 2012;15:17-40. doi: 10.1159/000329669. Epub 2011 Nov 11. Review.

PMID:
22142955
7.

The "most wanted" taxa from the human microbiome for whole genome sequencing.

Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM.

PLoS One. 2012;7(7):e41294. doi: 10.1371/journal.pone.0041294. Epub 2012 Jul 26.

8.

Lineage-dependent ecological coherence in bacteria.

Koeppel AF, Wu M.

FEMS Microbiol Ecol. 2012 Sep;81(3):574-82. doi: 10.1111/j.1574-6941.2012.01387.x. Epub 2012 May 23.

9.

Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals.

Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, Beck JM, Curtis JL, Huffnagle GB.

MBio. 2015 Mar 3;6(2):e00037. doi: 10.1128/mBio.00037-15.

10.

Microbial "social networks".

Fernandez M, Riveros JD, Campos M, Mathee K, Narasimhan G.

BMC Genomics. 2015;16 Suppl 11:S6. doi: 10.1186/1471-2164-16-S11-S6. Epub 2015 Nov 10.

11.

Functional dynamics of the gut microbiome in elderly people during probiotic consumption.

Eloe-Fadrosh EA, Brady A, Crabtree J, Drabek EF, Ma B, Mahurkar A, Ravel J, Haverkamp M, Fiorino AM, Botelho C, Andreyeva I, Hibberd PL, Fraser CM.

MBio. 2015 Apr 14;6(2). pii: e00231-15. doi: 10.1128/mBio.00231-15.

12.

A core gut microbiome in obese and lean twins.

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI.

Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540. Epub 2008 Nov 30.

13.

Microbial composition of human appendices from patients following appendectomy.

Guinane CM, Tadrous A, Fouhy F, Ryan CA, Dempsey EM, Murphy B, Andrews E, Cotter PD, Stanton C, Ross RP.

MBio. 2013 Jan 15;4(1). pii: e00366-12. doi: 10.1128/mBio.00366-12.

14.

Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs.

Lowe BA, Marsh TL, Isaacs-Cosgrove N, Kirkwood RN, Kiupel M, Mulks MH.

BMC Microbiol. 2012 Feb 7;12:20. doi: 10.1186/1471-2180-12-20.

15.

Structure, function and diversity of the healthy human microbiome.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234.

16.

Species-level classification of the vaginal microbiome.

Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, Jefferson KK; Vaginal Microbiome Consortium (additional members), Buck GA.

BMC Genomics. 2012;13 Suppl 8:S17. doi: 10.1186/1471-2164-13-S8-S17. Epub 2012 Dec 17.

17.

The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing.

Drell T, Lutsar I, Stšepetova J, Parm U, Metsvaht T, Ilmoja ML, Simm J, Sepp E.

Gut Microbes. 2014 May-Jun;5(3):304-12. doi: 10.4161/gmic.28849.

18.

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.

Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J.

PLoS One. 2012;7(6):e36466. doi: 10.1371/journal.pone.0036466. Epub 2012 Jun 13.

19.

Molecular characterisation of the faecal microbiota in patients with type II diabetes.

Wu X, Ma C, Han L, Nawaz M, Gao F, Zhang X, Yu P, Zhao C, Li L, Zhou A, Wang J, Moore JE, Millar BC, Xu J.

Curr Microbiol. 2010 Jul;61(1):69-78. doi: 10.1007/s00284-010-9582-9. Epub 2010 Jan 20.

PMID:
20087741
20.

Bacteria from diverse habitats colonize and compete in the mouse gut.

Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI.

Cell. 2014 Oct 9;159(2):253-66. doi: 10.1016/j.cell.2014.09.008. Epub 2014 Oct 2.

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