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Items: 1 to 20 of 43

1.

Small RNA expression profiling by high-throughput sequencing: implications of enzymatic manipulation.

Zhuang F, Fuchs RT, Robb GB.

J Nucleic Acids. 2012;2012:360358. doi: 10.1155/2012/360358. Epub 2012 Jun 20.

2.

Detection of small RNAs and microRNAs using deep sequencing technology.

Havecker ER.

Methods Mol Biol. 2011;732:55-68. doi: 10.1007/978-1-61779-083-6_5.

PMID:
21431705
3.

Regulatory RNAs in archaea: first target identification in Methanoarchaea.

Prasse D, Ehlers C, Backofen R, Schmitz RA.

Biochem Soc Trans. 2013 Feb 1;41(1):344-9. doi: 10.1042/BST20120280.

PMID:
23356309
4.

Sample preparation for small RNA massive parallel sequencing.

Gommans WM, Berezikov E.

Methods Mol Biol. 2012;786:167-78. doi: 10.1007/978-1-61779-292-2_10.

PMID:
21938626
5.

Small RNA Profiling by Next-Generation Sequencing Using High-Definition Adapters.

Billmeier M, Xu P.

Methods Mol Biol. 2017;1580:45-57. doi: 10.1007/978-1-4939-6866-4_4.

PMID:
28439825
6.

Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application.

Soares AR, Pereira PM, Santos MA.

Methods Mol Biol. 2012;822:189-204. doi: 10.1007/978-1-61779-427-8_13.

PMID:
22144200
7.

The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis.

Mohorianu I, Stocks MB, Applegate CS, Folkes L, Moulton V.

Methods Mol Biol. 2017;1580:193-224. doi: 10.1007/978-1-4939-6866-4_14.

PMID:
28439835
8.

High-throughput sequencing of Hop stunt viroid-derived small RNAs from cucumber leaves and phloem.

Martinez G, Donaire L, Llave C, Pallas V, Gomez G.

Mol Plant Pathol. 2010 May;11(3):347-59. doi: 10.1111/j.1364-3703.2009.00608.x.

PMID:
20447283
9.

How to find small non-coding RNAs in bacteria.

Vogel J, Sharma CM.

Biol Chem. 2005 Dec;386(12):1219-38. Review.

PMID:
16336117
10.

Experimental approaches for the discovery and characterization of regulatory small RNA.

Sharma CM, Vogel J.

Curr Opin Microbiol. 2009 Oct;12(5):536-46. doi: 10.1016/j.mib.2009.07.006. Epub 2009 Sep 14. Review.

PMID:
19758836
11.

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.

Schlüter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jänicke S, Becker JD, Giegerich R, Becker A.

BMC Genomics. 2010 Apr 17;11:245. doi: 10.1186/1471-2164-11-245.

12.

Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii.

Babski J, Tjaden B, Voss B, Jellen-Ritter A, Marchfelder A, Hess WR, Soppa J.

RNA Biol. 2011 Sep-Oct;8(5):806-16. doi: 10.4161/rna.8.5.16039. Epub 2011 Jun 29.

PMID:
21712649
13.

Functional characterization of plant small RNAs based on next-generation sequencing data.

Chen M, Meng Y, Gu H, Chen D.

Comput Biol Chem. 2010 Dec;34(5-6):308-12. doi: 10.1016/j.compbiolchem.2010.10.001. Epub 2010 Oct 27.

PMID:
21030312
14.

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes.

Blencowe BJ, Ahmad S, Lee LJ.

Genes Dev. 2009 Jun 15;23(12):1379-86. doi: 10.1101/gad.1788009. Review.

15.

Regulatory RNAs in Haloferax volcanii.

Fischer S, Benz J, Späth B, Jellen-Ritter A, Heyer R, Dörr M, Maier LK, Menzel-Hobeck C, Lehr M, Jantzer K, Babski J, Soppa J, Marchfelder A.

Biochem Soc Trans. 2011 Jan;39(1):159-62. doi: 10.1042/BST0390159.

PMID:
21265765
16.

New virus discovery by deep sequencing of small RNAs.

Singh K, Kaur R, Qiu W.

Methods Mol Biol. 2012;883:177-91. doi: 10.1007/978-1-61779-839-9_14.

PMID:
22589134
17.

Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells.

Ortega AD, Gonzalo-Asensio J, García-del Portillo F.

RNA Biol. 2012 Apr;9(4):469-88. doi: 10.4161/rna.19317. Epub 2012 Feb 16.

PMID:
22336761
18.

Computational approaches for the discovery of bacterial small RNAs.

Kulkarni RV, Kulkarni PR.

Methods. 2007 Oct;43(2):131-9.

PMID:
17889800
19.

Genetic screens to identify bacterial sRNA regulators.

Mandin P.

Methods Mol Biol. 2012;905:41-60. doi: 10.1007/978-1-61779-949-5_4.

PMID:
22735997
20.

Small non-coding RNAs in Streptomyces coelicolor.

Swiercz JP, Hindra, Bobek J, Bobek J, Haiser HJ, Di Berardo C, Tjaden B, Elliot MA.

Nucleic Acids Res. 2008 Dec;36(22):7240-51. doi: 10.1093/nar/gkn898. Epub 2008 Nov 12.

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