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Items: 1 to 20 of 365


Concept annotation in the CRAFT corpus.

Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE.

BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161.


NCBI disease corpus: a resource for disease name recognition and concept normalization.

Doğan RI, Leaman R, Lu Z.

J Biomed Inform. 2014 Feb;47:1-10. doi: 10.1016/j.jbi.2013.12.006. Epub 2014 Jan 3.


Desiderata for ontologies to be used in semantic annotation of biomedical documents.

Bada M, Hunter L.

J Biomed Inform. 2011 Feb;44(1):94-101. doi: 10.1016/j.jbi.2010.10.002. Epub 2010 Oct 26.


A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE.

BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207.


Construction of an annotated corpus to support biomedical information extraction.

Thompson P, Iqbal SA, McNaught J, Ananiadou S.

BMC Bioinformatics. 2009 Oct 23;10:349. doi: 10.1186/1471-2105-10-349.


Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3. doi: 10.1186/1471-2105-9-S3-S3.


Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.

Cohen KB, Lanfranchi A, Choi MJ, Bada M, Baumgartner WA Jr, Panteleyeva N, Verspoor K, Palmer M, Hunter LE.

BMC Bioinformatics. 2017 Aug 17;18(1):372. doi: 10.1186/s12859-017-1775-9.


Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition.

Funk CS, Cohen KB, Hunter LE, Verspoor KM.

J Biomed Semantics. 2016 Sep 9;7:52. doi: 10.1186/s13326-016-0096-7.


Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes.

Oellrich A, Collier N, Smedley D, Groza T.

PLoS One. 2015 Jan 21;10(1):e0116040. doi: 10.1371/journal.pone.0116040. eCollection 2015.


New directions in biomedical text annotation: definitions, guidelines and corpus construction.

Wilbur WJ, Rzhetsky A, Shatkay H.

BMC Bioinformatics. 2006 Jul 25;7:356.


Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.


Challenges for automatically extracting molecular interactions from full-text articles.

McIntosh T, Curran JR.

BMC Bioinformatics. 2009 Sep 24;10:311. doi: 10.1186/1471-2105-10-311.


Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles.

Blake C.

J Biomed Inform. 2010 Apr;43(2):173-89. doi: 10.1016/j.jbi.2009.11.001. Epub 2009 Nov 10.


BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z.

Database (Oxford). 2016 May 9;2016. pii: baw068. doi: 10.1093/database/baw068. Print 2016.


Building a semantically annotated corpus of clinical texts.

Roberts A, Gaizauskas R, Hepple M, Demetriou G, Guo Y, Roberts I, Setzer A.

J Biomed Inform. 2009 Oct;42(5):950-66. doi: 10.1016/j.jbi.2008.12.013. Epub 2009 Jan 23.


LINNAEUS: a species name identification system for biomedical literature.

Gerner M, Nenadic G, Bergman CM.

BMC Bioinformatics. 2010 Feb 11;11:85. doi: 10.1186/1471-2105-11-85.


A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC.

Kors JA, Clematide S, Akhondi SA, van Mulligen EM, Rebholz-Schuhmann D.

J Am Med Inform Assoc. 2015 Sep;22(5):948-56. doi: 10.1093/jamia/ocv037. Epub 2015 May 6.


Semantic annotation of biological concepts interplaying microbial cellular responses.

Carreira R, Carneiro S, Pereira R, Rocha M, Rocha I, Ferreira EC, Lourenço A.

BMC Bioinformatics. 2011 Nov 28;12:460. doi: 10.1186/1471-2105-12-460.


A modular framework for biomedical concept recognition.

Campos D, Matos S, Oliveira JL.

BMC Bioinformatics. 2013 Sep 24;14:281. doi: 10.1186/1471-2105-14-281.


The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes.

Vincze V, Szarvas G, Farkas R, Móra G, Csirik J.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S9. doi: 10.1186/1471-2105-9-S11-S9.

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