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Items: 1 to 20 of 175

1.

Oomycete Transcriptomics Database: a resource for oomycete transcriptomes.

Tripathy S, Deo T, Tyler BM.

BMC Genomics. 2012 Jul 6;13:303. doi: 10.1186/1471-2164-13-303.

2.

Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions.

Gajendran K, Gonzales MD, Farmer A, Archuleta E, Win J, Waugh ME, Kamoun S.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D465-70.

3.

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.

Ashrafi H, Hill T, Stoffel K, Kozik A, Yao J, Chin-Wo SR, Van Deynze A.

BMC Genomics. 2012 Oct 30;13:571. doi: 10.1186/1471-2164-13-571.

4.

Phytophthora sojae: root rot pathogen of soybean and model oomycete.

Tyler BM.

Mol Plant Pathol. 2007 Jan;8(1):1-8. doi: 10.1111/j.1364-3703.2006.00373.x.

PMID:
20507474
5.

afterParty: turning raw transcriptomes into permanent resources.

Jones M, Blaxter M.

BMC Bioinformatics. 2013 Oct 7;14:301. doi: 10.1186/1471-2105-14-301.

6.

Comparative analysis of expressed sequences in Phytophthora sojae.

Qutob D, Hraber PT, Sobral BW, Gijzen M.

Plant Physiol. 2000 May;123(1):243-54.

7.

Homologous RXLR effectors from Hyaloperonospora arabidopsidis and Phytophthora sojae suppress immunity in distantly related plants.

Anderson RG, Casady MS, Fee RA, Vaughan MM, Deb D, Fedkenheuer K, Huffaker A, Schmelz EA, Tyler BM, McDowell JM.

Plant J. 2012 Dec;72(6):882-93. doi: 10.1111/j.1365-313X.2012.05079.x.

8.

RNASeqBrowser: a genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks.

An J, Lai J, Wood DL, Sajjanhar A, Wang C, Tevz G, Lehman ML, Nelson CC.

BMC Genomics. 2015 Mar 1;16:145. doi: 10.1186/s12864-015-1346-2.

9.

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.

10.

SoyXpress: a database for exploring the soybean transcriptome.

Cheng KC, Strömvik MV.

BMC Genomics. 2008 Aug 1;9:368. doi: 10.1186/1471-2164-9-368.

11.

The phytophthora genome initiative database: informatics and analysis for distributed pathogenomic research.

Waugh M, Hraber P, Weller J, Wu Y, Chen G, Inman J, Kiphart D, Sobral B.

Nucleic Acids Res. 2000 Jan 1;28(1):87-90.

12.

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database.

Blavet N, Charif D, Oger-Desfeux C, Marais GA, Widmer A.

BMC Genomics. 2011 Jul 26;12:376. doi: 10.1186/1471-2164-12-376.

13.

PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics.

Duan X, Schmidt E, Li P, Lenox D, Liu L, Shu C, Zhang J, Liang C.

BMC Plant Biol. 2012 Jun 19;12:94. doi: 10.1186/1471-2229-12-94.

14.

OrchidBase: a collection of sequences of the transcriptome derived from orchids.

Fu CH, Chen YW, Hsiao YY, Pan ZJ, Liu ZJ, Huang YM, Tsai WC, Chen HH.

Plant Cell Physiol. 2011 Feb;52(2):238-43. doi: 10.1093/pcp/pcq201.

PMID:
21245031
15.

Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.

Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A.

PLoS One. 2014 Jan 10;9(1):e85568. doi: 10.1371/journal.pone.0085568.

16.

VMD: a community annotation database for oomycetes and microbial genomes.

Tripathy S, Pandey VN, Fang B, Salas F, Tyler BM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D379-81.

17.

Digital gene expression profiling of the Phytophthora sojae transcriptome.

Ye W, Wang X, Tao K, Lu Y, Dai T, Dong S, Dou D, Gijzen M, Wang Y.

Mol Plant Microbe Interact. 2011 Dec;24(12):1530-9. doi: 10.1094/MPMI-05-11-0106.

18.

VTBuilder: a tool for the assembly of multi isoform transcriptomes.

Archer J, Whiteley G, Casewell NR, Harrison RA, Wagstaff SC.

BMC Bioinformatics. 2014 Dec 3;15:389. doi: 10.1186/s12859-014-0389-8.

19.

Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection.

Torto-Alalibo TA, Tripathy S, Smith BM, Arredondo FD, Zhou L, Li H, Chibucos MC, Qutob D, Gijzen M, Mao C, Sobral BW, Waugh ME, Mitchell TK, Dean RA, Tyler BM.

Mol Plant Microbe Interact. 2007 Jul;20(7):781-93.

20.

De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes.

Links MG, Holub E, Jiang RH, Sharpe AG, Hegedus D, Beynon E, Sillito D, Clarke WE, Uzuhashi S, Borhan MH.

BMC Genomics. 2011 Oct 13;12:503. doi: 10.1186/1471-2164-12-503.

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