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Items: 1 to 20 of 90

1.

Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes.

Jeraldo P, Sipos M, Chia N, Brulc JM, Dhillon AS, Konkel ME, Larson CL, Nelson KE, Qu A, Schook LB, Yang F, White BA, Goldenfeld N.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9692-8. doi: 10.1073/pnas.1206721109. Epub 2012 May 21.

2.

Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities.

Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE.

PLoS One. 2010 Nov 12;5(11):e13963. doi: 10.1371/journal.pone.0013963.

3.

Community assembly of a euryhaline fish microbiome during salinity acclimation.

Schmidt VT, Smith KF, Melvin DW, Amaral-Zettler LA.

Mol Ecol. 2015 May;24(10):2537-50. doi: 10.1111/mec.13177. Epub 2015 Apr 20.

PMID:
25819646
4.

Antibiotics in feed induce prophages in swine fecal microbiomes.

Allen HK, Looft T, Bayles DO, Humphrey S, Levine UY, Alt D, Stanton TB.

MBio. 2011 Nov 29;2(6). pii: e00260-11. doi: 10.1128/mBio.00260-11. Print 2011.

5.

Niche and neutral models predict asymptotically equivalent species abundance distributions in high-diversity ecological communities.

Chisholm RA, Pacala SW.

Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15821-5. doi: 10.1073/pnas.1009387107. Epub 2010 Aug 23.

6.

Neutral processes and species sorting in benthic microalgal community assembly: effects of tidal resuspension.

Plante CJ, Fleer V, Jones ML.

J Phycol. 2016 Oct;52(5):827-839. doi: 10.1111/jpy.12445. Epub 2016 Aug 31.

PMID:
27373762
7.

Global patterns in the biogeography of bacterial taxa.

Nemergut DR, Costello EK, Hamady M, Lozupone C, Jiang L, Schmidt SK, Fierer N, Townsend AR, Cleveland CC, Stanish L, Knight R.

Environ Microbiol. 2011 Jan;13(1):135-44. doi: 10.1111/j.1462-2920.2010.02315.x.

PMID:
21199253
8.
9.

Ecological equivalence: a realistic assumption for niche theory as a testable alternative to neutral theory.

Doncaster CP.

PLoS One. 2009 Oct 14;4(10):e7460. doi: 10.1371/journal.pone.0007460.

10.

Metacommunity speciation models and their implications for diversification theory.

Hubert N, Calcagno V, Etienne RS, Mouquet N.

Ecol Lett. 2015 Aug;18(8):864-81. doi: 10.1111/ele.12458. Epub 2015 Jun 2. Review.

PMID:
26036711
11.

Relative roles of niche and neutral processes in structuring a soil microbial community.

Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH.

ISME J. 2010 Mar;4(3):337-45. doi: 10.1038/ismej.2009.122. Epub 2009 Nov 19. Erratum in: ISME J. 2010 Aug;4(8):1078.

PMID:
19924158
12.

A mathematical synthesis of niche and neutral theories in community ecology.

Haegeman B, Loreau M.

J Theor Biol. 2011 Jan 21;269(1):150-65. doi: 10.1016/j.jtbi.2010.10.006. Epub 2010 Oct 12.

PMID:
20946903
13.

Species diversity in local neutral communities.

Hu XS, He F, Hubbell SP.

Am Nat. 2007 Dec;170(6):844-53. doi: 10.1086/522935.

PMID:
18171167
14.

Neutral theory predicts the relative abundance and diversity of genetic elements in a broad array of eukaryotic genomes.

Serra F, Becher V, Dopazo H.

PLoS One. 2013 Jun 14;8(6):e63915. doi: 10.1371/journal.pone.0063915. Print 2013.

15.

Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison.

Yang F, Chia N, White BA, Schook LB.

BMC Bioinformatics. 2013 Apr 23;14:136. doi: 10.1186/1471-2105-14-136.

17.

Community assembly in Lake Tanganyika cichlid fish: quantifying the contributions of both niche-based and neutral processes.

Janzen T, Alzate A, Muschick M, Maan ME, van der Plas F, Etienne RS.

Ecol Evol. 2017 Jan 22;7(4):1057-1067. doi: 10.1002/ece3.2689. eCollection 2017 Feb.

18.

Niche versus neutrality: a dynamical analysis.

Kalyuzhny M, Seri E, Chocron R, Flather CH, Kadmon R, Shnerb NM.

Am Nat. 2014 Oct;184(4):439-46. doi: 10.1086/677930. Epub 2014 Aug 18. Erratum in: Am Nat. 2015 Jul;186(1):163-4.

PMID:
25226179
19.

When can we distinguish between neutral and non-neutral processes in community dynamics under ecological drift?

Ruokolainen L, Ranta E, Kaitala V, Fowler MS.

Ecol Lett. 2009 Sep;12(9):909-19. doi: 10.1111/j.1461-0248.2009.01346.x. Epub 2009 Jun 30.

PMID:
19570103
20.

Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community.

Zhou J, Liu W, Deng Y, Jiang YH, Xue K, He Z, Van Nostrand JD, Wu L, Yang Y, Wang A.

MBio. 2013 Mar 5;4(2). pii: e00584-12. doi: 10.1128/mBio.00584-12.

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