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Items: 1 to 20 of 107

1.

Immune epitope database analysis resource.

Kim Y, Ponomarenko J, Zhu Z, Tamang D, Wang P, Greenbaum J, Lundegaard C, Sette A, Lund O, Bourne PE, Nielsen M, Peters B.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W525-30. doi: 10.1093/nar/gks438. Epub 2012 May 18.

2.

Immune epitope database analysis resource (IEDB-AR).

Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31.

3.

IEDB-3D: structural data within the immune epitope database.

Ponomarenko J, Papangelopoulos N, Zajonc DM, Peters B, Sette A, Bourne PE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1164-70. doi: 10.1093/nar/gkq888. Epub 2010 Oct 28.

4.

Computational Prediction of Usutu Virus E Protein B Cell and T Cell Epitopes for Potential Vaccine Development.

Palanisamy N, Lennerstrand J.

Scand J Immunol. 2017 May;85(5):350-364. doi: 10.1111/sji.12544.

PMID:
28273384
5.

BlockLogo: visualization of peptide and sequence motif conservation.

Olsen LR, Kudahl UJ, Simon C, Sun J, Schönbach C, Reinherz EL, Zhang GL, Brusic V.

J Immunol Methods. 2013 Dec 31;400-401:37-44. doi: 10.1016/j.jim.2013.08.014. Epub 2013 Aug 31.

6.

Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource.

Kim Y, Sette A, Peters B.

J Immunol Methods. 2011 Nov 30;374(1-2):62-9. doi: 10.1016/j.jim.2010.10.010. Epub 2010 Oct 31. Review.

7.
8.

Automated benchmarking of peptide-MHC class I binding predictions.

Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M.

Bioinformatics. 2015 Jul 1;31(13):2174-81. doi: 10.1093/bioinformatics/btv123. Epub 2015 Feb 25.

9.
10.

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.

Paul S, Lindestam Arlehamn CS, Scriba TJ, Dillon MB, Oseroff C, Hinz D, McKinney DM, Carrasco Pro S, Sidney J, Peters B, Sette A.

J Immunol Methods. 2015 Jul;422:28-34. doi: 10.1016/j.jim.2015.03.022. Epub 2015 Apr 7.

11.
12.

EpiTOP--a proteochemometric tool for MHC class II binding prediction.

Dimitrov I, Garnev P, Flower DR, Doytchinova I.

Bioinformatics. 2010 Aug 15;26(16):2066-8. doi: 10.1093/bioinformatics/btq324. Epub 2010 Jun 23.

PMID:
20576624
13.

Development and validation of an epitope prediction tool for swine (PigMatrix) based on the pocket profile method.

Gutiérrez AH, Martin WD, Bailey-Kellogg C, Terry F, Moise L, De Groot AS.

BMC Bioinformatics. 2015 Sep 15;16:290. doi: 10.1186/s12859-015-0724-8.

14.

Prediction of Antigenic B and T Cell Epitopes via Energy Decomposition Analysis: Description of the Web-Based Prediction Tool BEPPE.

Peri C, Solé OC, Corrada D, Gori A, Daura X, Colombo G.

Methods Mol Biol. 2015;1348:13-22. doi: 10.1007/978-1-4939-2999-3_3.

PMID:
26424259
15.

Building MHC class II epitope predictor using machine learning approaches.

Eng LP, Tan TW, Tong JC.

Methods Mol Biol. 2015;1268:67-73. doi: 10.1007/978-1-4939-2285-7_4.

PMID:
25555721
16.

MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries.

Chen WH, Sun PP, Lu Y, Guo WW, Huang YX, Ma ZQ.

BMC Bioinformatics. 2011 May 25;12:199. doi: 10.1186/1471-2105-12-199.

17.

MetaMHC: a meta approach to predict peptides binding to MHC molecules.

Hu X, Zhou W, Udaka K, Mamitsuka H, Zhu S.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W474-9. doi: 10.1093/nar/gkq407. Epub 2010 May 18.

18.

ElliPro: a new structure-based tool for the prediction of antibody epitopes.

Ponomarenko J, Bui HH, Li W, Fusseder N, Bourne PE, Sette A, Peters B.

BMC Bioinformatics. 2008 Dec 2;9:514. doi: 10.1186/1471-2105-9-514.

19.

Major histocompatibility complex linked databases and prediction tools for designing vaccines.

Singh SP, Mishra BN.

Hum Immunol. 2016 Mar;77(3):295-306. doi: 10.1016/j.humimm.2015.11.012. Epub 2015 Nov 14.

PMID:
26585361
20.

Epitope distribution in ordered and disordered protein regions. Part B - Ordered regions and disordered binding sites are targets of T- and B-cell immunity.

Pavlović MD, Jandrlić DR, Mitić NS.

J Immunol Methods. 2014 May;407:90-107. doi: 10.1016/j.jim.2014.03.027. Epub 2014 Apr 12.

PMID:
24726865

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