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Items: 1 to 20 of 106

1.

SNPnexus: a web server for functional annotation of novel and publicly known genetic variants (2012 update).

Dayem Ullah AZ, Lemoine NR, Chelala C.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W65-70. doi: 10.1093/nar/gks364. Epub 2012 Apr 28.

2.

A practical guide for the functional annotation of genetic variations using SNPnexus.

Dayem Ullah AZ, Lemoine NR, Chelala C.

Brief Bioinform. 2013 Jul;14(4):437-47. doi: 10.1093/bib/bbt004. Epub 2013 Feb 8.

PMID:
23395730
3.

SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms.

Chelala C, Khan A, Lemoine NR.

Bioinformatics. 2009 Mar 1;25(5):655-61. doi: 10.1093/bioinformatics/btn653. Epub 2008 Dec 19.

4.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

5.

AnnTools: a comprehensive and versatile annotation toolkit for genomic variants.

Makarov V, O'Grady T, Cai G, Lihm J, Buxbaum JD, Yoon S.

Bioinformatics. 2012 Mar 1;28(5):724-5. doi: 10.1093/bioinformatics/bts032. Epub 2012 Jan 18.

6.

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.

Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros JP, Ruiz M, This P.

BMC Bioinformatics. 2011 May 5;12:134. doi: 10.1186/1471-2105-12-134.

7.

CNVannotator: a comprehensive annotation server for copy number variation in the human genome.

Zhao M, Zhao Z.

PLoS One. 2013 Nov 14;8(11):e80170. doi: 10.1371/journal.pone.0080170. eCollection 2013.

8.

Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.

Jiang J, Jiang L, Zhou B, Fu W, Liu JF, Zhang Q.

BMC Genet. 2011 Oct 7;12:85. doi: 10.1186/1471-2156-12-85.

9.

AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.

Vuong H, Che A, Ravichandran S, Luke BT, Collins JR, Mudunuri US.

Bioinformatics. 2015 Aug 15;31(16):2748-50. doi: 10.1093/bioinformatics/btv200. Epub 2015 Apr 9.

10.

PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.

Bendl J, Musil M, Štourač J, Zendulka J, Damborský J, Brezovský J.

PLoS Comput Biol. 2016 May 25;12(5):e1004962. doi: 10.1371/journal.pcbi.1004962. eCollection 2016 May.

11.

SNPsnap: a Web-based tool for identification and annotation of matched SNPs.

Pers TH, Timshel P, Hirschhorn JN.

Bioinformatics. 2015 Feb 1;31(3):418-20. doi: 10.1093/bioinformatics/btu655. Epub 2014 Oct 13.

12.

A community-based resource for automatic exome variant-calling and annotation in Mendelian disorders.

Mutarelli M, Marwah V, Rispoli R, Carrella D, Dharmalingam G, Oliva G, di Bernardo D.

BMC Genomics. 2014;15 Suppl 3:S5. doi: 10.1186/1471-2164-15-S3-S5. Epub 2014 May 6.

13.

Current trend of annotating single nucleotide variation in humans--A case study on SNVrap.

Li MJ, Wang J.

Methods. 2015 Jun;79-80:32-40. doi: 10.1016/j.ymeth.2014.10.003. Epub 2014 Oct 13. Review.

PMID:
25308971
14.
15.

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.

Plant Cell Environ. 2014 May;37(5):1250-8. doi: 10.1111/pce.12231. Epub 2013 Dec 17.

16.

wANNOVAR: annotating genetic variants for personal genomes via the web.

Chang X, Wang K.

J Med Genet. 2012 Jul;49(7):433-6. doi: 10.1136/jmedgenet-2012-100918. Epub 2012 Jun 20.

17.

Annotation of functional variation in personal genomes using RegulomeDB.

Boyle AP, Hong EL, Hariharan M, Cheng Y, Schaub MA, Kasowski M, Karczewski KJ, Park J, Hitz BC, Weng S, Cherry JM, Snyder M.

Genome Res. 2012 Sep;22(9):1790-7. doi: 10.1101/gr.137323.112.

18.

Functional annotation signatures of disease susceptibility loci improve SNP association analysis.

Iversen ES, Lipton G, Clyde MA, Monteiro AN.

BMC Genomics. 2014 May 24;15:398. doi: 10.1186/1471-2164-15-398.

19.

GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.

Li MJ, Wang LY, Xia Z, Sham PC, Wang J.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W150-8. doi: 10.1093/nar/gkt456. Epub 2013 May 30.

20.

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.

Pico AR, Smirnov IV, Chang JS, Yeh RF, Wiemels JL, Wiencke JK, Tihan T, Conklin BR, Wrensch M.

Nucleic Acids Res. 2009 Jan;37(Database issue):D803-9. doi: 10.1093/nar/gkn756. Epub 2008 Nov 4.

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