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Items: 1 to 20 of 363

1.

Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm.

Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Arús P, Iezzoni A, Morgante M, Peace C.

PLoS One. 2012;7(4):e35668. doi: 10.1371/journal.pone.0035668. Epub 2012 Apr 20. Erratum in: PLoS One. 2012;7(6). doi:10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.

2.

Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry.

Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A.

PLoS One. 2012;7(12):e48305. doi: 10.1371/journal.pone.0048305. Epub 2012 Dec 20.

3.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C.

PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21.

4.

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection.

Ahmad R, Parfitt DE, Fass J, Ogundiwin E, Dhingra A, Gradziel TM, Lin D, Joshi NA, Martinez-Garcia PJ, Crisosto CH.

BMC Genomics. 2011 Nov 22;12:569. doi: 10.1186/1471-2164-12-569.

5.

Effect prediction of identified SNPs linked to fruit quality and chilling injury in peach [Prunus persica (L.) Batsch].

Martínez-García PJ, Fresnedo-Ramírez J, Parfitt DE, Gradziel TM, Crisosto CH.

Plant Mol Biol. 2013 Jan;81(1-2):161-74. doi: 10.1007/s11103-012-9989-8. Epub 2012 Nov 25.

PMID:
23184287
6.

Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm.

Micheletti D, Dettori MT, Micali S, Aramini V, Pacheco I, Da Silva Linge C, Foschi S, Banchi E, Barreneche T, Quilot-Turion B, Lambert P, Pascal T, Iglesias I, Carbó J, Wang LR, Ma RJ, Li XW, Gao ZS, Nazzicari N, Troggio M, Bassi D, Rossini L, Verde I, Laurens F, Arús P, Aranzana MJ.

PLoS One. 2015 Sep 9;10(9):e0136803. doi: 10.1371/journal.pone.0136803. eCollection 2015.

7.

Construction of High Density Sweet Cherry (Prunus avium L.) Linkage Maps Using Microsatellite Markers and SNPs Detected by Genotyping-by-Sequencing (GBS).

Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P.

PLoS One. 2015 May 26;10(5):e0127750. doi: 10.1371/journal.pone.0127750. eCollection 2015.

8.

Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).

Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M.

PLoS One. 2014 Oct 10;9(10):e110377. doi: 10.1371/journal.pone.0110377. eCollection 2014.

9.

Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing.

Koepke T, Schaeffer S, Krishnan V, Jiwan D, Harper A, Whiting M, Oraguzie N, Dhingra A.

BMC Genomics. 2012 Jan 12;13:18. doi: 10.1186/1471-2164-13-18.

10.

High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.

Bekele WA, Wieckhorst S, Friedt W, Snowdon RJ.

Plant Biotechnol J. 2013 Dec;11(9):1112-25. doi: 10.1111/pbi.12106. Epub 2013 Aug 7.

11.

Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch].

Bielenberg DG, Rauh B, Fan S, Gasic K, Abbott AG, Reighard GL, Okie WR, Wells CE.

PLoS One. 2015 Oct 2;10(10):e0139406. doi: 10.1371/journal.pone.0139406. eCollection 2015.

12.

Heterogeneity in the entire genome for three genotypes of peach [Prunus persica (L.) Batsch] as distinguished from sequence analysis of genomic variants.

Fresnedo-Ramírez J, Martínez-García PJ, Parfitt DE, Crisosto CH, Gradziel TM.

BMC Genomics. 2013 Nov 1;14:750. doi: 10.1186/1471-2164-14-750.

13.

Peach genetic resources: diversity, population structure and linkage disequilibrium.

Li XW, Meng XQ, Jia HJ, Yu ML, Ma RJ, Wang LR, Cao K, Shen ZJ, Niu L, Tian JB, Chen MJ, Xie M, Arus P, Gao ZS, Aranzana MJ.

BMC Genet. 2013 Sep 16;14:84. doi: 10.1186/1471-2156-14-84.

14.

Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids.

Montanari S, Saeed M, Knäbel M, Kim Y, Troggio M, Malnoy M, Velasco R, Fontana P, Won K, Durel CE, Perchepied L, Schaffer R, Wiedow C, Bus V, Brewer L, Gardiner SE, Crowhurst RN, Chagné D.

PLoS One. 2013 Oct 14;8(10):e77022. doi: 10.1371/journal.pone.0077022. eCollection 2013.

15.

Simple SNP-based minimal marker genotyping for Humulus lupulus L. identification and variety validation.

Henning JA, Coggins J, Peterson M.

BMC Res Notes. 2015 Oct 6;8:542. doi: 10.1186/s13104-015-1492-2.

16.

Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach.

Pirona R, Eduardo I, Pacheco I, Da Silva Linge C, Miculan M, Verde I, Tartarini S, Dondini L, Pea G, Bassi D, Rossini L.

BMC Plant Biol. 2013 Oct 22;13:166. doi: 10.1186/1471-2229-13-166.

17.

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding.

Mammadov JA, Chen W, Ren R, Pai R, Marchione W, Yalçin F, Witsenboer H, Greene TW, Thompson SA, Kumpatla SP.

Theor Appl Genet. 2010 Aug;121(3):577-88. doi: 10.1007/s00122-010-1331-8. Epub 2010 Apr 18.

PMID:
20401646
18.

The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.

19.

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa.

Bassil NV, Davis TM, Zhang H, Ficklin S, Mittmann M, Webster T, Mahoney L, Wood D, Alperin ES, Rosyara UR, Koehorst-Vanc Putten H, Monfort A, Sargent DJ, Amaya I, Denoyes B, Bianco L, van Dijk T, Pirani A, Iezzoni A, Main D, Peace C, Yang Y, Whitaker V, Verma S, Bellon L, Brew F, Herrera R, van de Weg E.

BMC Genomics. 2015 Mar 7;16:155. doi: 10.1186/s12864-015-1310-1.

20.

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.

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