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Items: 1 to 20 of 179

1.

Genome-wide identification and characterization of replication origins by deep sequencing.

Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, Rhind N.

Genome Biol. 2012 Apr 24;13(4):R27. doi: 10.1186/gb-2012-13-4-r27.

2.

Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres.

Tsai HJ, Baller JA, Liachko I, Koren A, Burrack LS, Hickman MA, Thevandavakkam MA, Rusche LN, Berman J.

MBio. 2014 Sep 2;5(5):e01703-14. doi: 10.1128/mBio.01703-14.

3.

Physical mapping of origins of replication in the fission yeast Schizosaccharomyces pombe.

Wohlgemuth JG, Bulboaca GH, Moghadam M, Caddle MS, Calos MP.

Mol Biol Cell. 1994 Aug;5(8):839-49.

4.

Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.

Berbenetz NM, Nislow C, Brown GW.

PLoS Genet. 2010 Sep 2;6(9):e1001092. doi: 10.1371/journal.pgen.1001092.

5.

Organization of DNA replication origins in the fission yeast genome.

Gómez M, Antequera F.

EMBO J. 1999 Oct 15;18(20):5683-90.

6.

The chromatin environment shapes DNA replication origin organization and defines origin classes.

Cayrou C, Ballester B, Peiffer I, Fenouil R, Coulombe P, Andrau JC, van Helden J, Méchali M.

Genome Res. 2015 Dec;25(12):1873-85. doi: 10.1101/gr.192799.115. Epub 2015 Nov 11.

7.

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.

Hayashi M, Katou Y, Itoh T, Tazumi A, Yamada Y, Takahashi T, Nakagawa T, Shirahige K, Masukata H.

EMBO J. 2007 Mar 7;26(5):1327-39. Epub 2007 Feb 15. Erratum in: EMBO J. 2007 Jun 6;26(11):2821. Tazumi, Mitsutoshi [corrected to Tazumi, Atsutoshi].

8.

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.

Lantermann AB, Straub T, Strålfors A, Yuan GC, Ekwall K, Korber P.

Nat Struct Mol Biol. 2010 Feb;17(2):251-7. doi: 10.1038/nsmb.1741. Epub 2010 Jan 31.

PMID:
20118936
9.

Specification of DNA replication origins and genomic base composition in fission yeasts.

Mojardín L, Vázquez E, Antequera F.

J Mol Biol. 2013 Nov 29;425(23):4706-13. doi: 10.1016/j.jmb.2013.09.023. Epub 2013 Oct 3. Review.

PMID:
24095860
10.

Nucleosomal organization of replication origins and meiotic recombination hotspots in fission yeast.

de Castro E, Soriano I, Marín L, Serrano R, Quintales L, Antequera F.

EMBO J. 2012 Jan 4;31(1):124-37. doi: 10.1038/emboj.2011.350. Epub 2011 Oct 11.

11.

Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe.

Lantermann A, Strålfors A, Fagerström-Billai F, Korber P, Ekwall K.

Methods. 2009 Jul;48(3):218-25. doi: 10.1016/j.ymeth.2009.02.004. Epub 2009 Feb 20.

PMID:
19233281
12.

Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning.

Moyle-Heyrman G, Zaichuk T, Xi L, Zhang Q, Uhlenbeck OC, Holmgren R, Widom J, Wang JP.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20158-63. doi: 10.1073/pnas.1315809110. Epub 2013 Nov 25.

13.

Taz1-Shelterin Promotes Facultative Heterochromatin Assembly at Chromosome-Internal Sites Containing Late Replication Origins.

Zofall M, Smith DR, Mizuguchi T, Dhakshnamoorthy J, Grewal SIS.

Mol Cell. 2016 Jun 16;62(6):862-874. doi: 10.1016/j.molcel.2016.04.034. Epub 2016 Jun 2.

14.

Conserved nucleosome positioning defines replication origins.

Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM.

Genes Dev. 2010 Apr 15;24(8):748-53. doi: 10.1101/gad.1913210. Epub 2010 Mar 29.

15.

DNA replication origins fire stochastically in fission yeast.

Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N.

Mol Biol Cell. 2006 Jan;17(1):308-16. Epub 2005 Oct 26.

16.

Chromatin architectures at fission yeast transcriptional promoters and replication origins.

Givens RM, Lai WK, Rizzo JM, Bard JE, Mieczkowski PA, Leatherwood J, Huberman JA, Buck MJ.

Nucleic Acids Res. 2012 Aug;40(15):7176-89. doi: 10.1093/nar/gks351. Epub 2012 May 9.

17.

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM.

Science. 2001 Dec 14;294(5550):2357-60.

18.

High density of weak replication origins in a 75-kb region of chromosome 2 of fission yeast.

Dubey DD, Srivastava VK, Pratihar AS, Yadava MP.

Genes Cells. 2010 Jan;15(1):1-12. doi: 10.1111/j.1365-2443.2009.01363.x. Epub 2009 Dec 9.

19.

Prediction of Saccharomyces cerevisiae replication origins.

Breier AM, Chatterji S, Cozzarelli NR.

Genome Biol. 2004;5(4):R22. Epub 2004 Mar 4.

20.

Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe.

Lenglez S, Hermand D, Decottignies A.

Genome Res. 2010 Sep;20(9):1250-61. doi: 10.1101/gr.104513.109. Epub 2010 Aug 5.

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