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Items: 1 to 20 of 87

1.

Fast and accurate inference of local ancestry in Latino populations.

Baran Y, Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Burchard EG, Halperin E.

Bioinformatics. 2012 May 15;28(10):1359-67. doi: 10.1093/bioinformatics/bts144. Epub 2012 Apr 11.

2.

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation.

Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Zaitlen N, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Chen GK, Le Marchand L, Henderson B, Reich D, Haiman CA, Gonzàlez Burchard E, Halperin E.

Bioinformatics. 2013 Jun 1;29(11):1407-15. doi: 10.1093/bioinformatics/btt166. Epub 2013 Apr 9.

3.

Reconstructing the population genetic history of the Caribbean.

Moreno-Estrada A, Gravel S, Zakharia F, McCauley JL, Byrnes JK, Gignoux CR, Ortiz-Tello PA, Martínez RJ, Hedges DJ, Morris RW, Eng C, Sandoval K, Acevedo-Acevedo S, Norman PJ, Layrisse Z, Parham P, Martínez-Cruzado JC, Burchard EG, Cuccaro ML, Martin ER, Bustamante CD.

PLoS Genet. 2013 Nov;9(11):e1003925. doi: 10.1371/journal.pgen.1003925. Epub 2013 Nov 14.

4.

On the inference of ancestries in admixed populations.

Sankararaman S, Kimmel G, Halperin E, Jordan MI.

Genome Res. 2008 Apr;18(4):668-75. doi: 10.1101/gr.072751.107. Epub 2008 Mar 18.

5.

Multiway admixture deconvolution using phased or unphased ancestral panels.

Churchhouse C, Marchini J.

Genet Epidemiol. 2013 Jan;37(1):1-12. doi: 10.1002/gepi.21692. Epub 2012 Nov 7.

PMID:
23136122
6.

Reconstructing Native American migrations from whole-genome and whole-exome data.

Gravel S, Zakharia F, Moreno-Estrada A, Byrnes JK, Muzzio M, Rodriguez-Flores JL, Kenny EE, Gignoux CR, Maples BK, Guiblet W, Dutil J, Via M, Sandoval K, Bedoya G; 1000 Genomes Project, Oleksyk TK, Ruiz-Linares A, Burchard EG, Martinez-Cruzado JC, Bustamante CD.

PLoS Genet. 2013;9(12):e1004023. doi: 10.1371/journal.pgen.1004023. Epub 2013 Dec 26.

7.

Inference of locus-specific ancestry in closely related populations.

Pasaniuc B, Sankararaman S, Kimmel G, Halperin E.

Bioinformatics. 2009 Jun 15;25(12):i213-21. doi: 10.1093/bioinformatics/btp197.

8.

A genomewide admixture mapping panel for Hispanic/Latino populations.

Mao X, Bigham AW, Mei R, Gutierrez G, Weiss KM, Brutsaert TD, Leon-Velarde F, Moore LG, Vargas E, McKeigue PM, Shriver MD, Parra EJ.

Am J Hum Genet. 2007 Jun;80(6):1171-8. Epub 2007 Apr 20.

9.

Ancestry inference in complex admixtures via variable-length Markov chain linkage models.

Rodriguez JM, Bercovici S, Elmore M, Batzoglou S.

J Comput Biol. 2013 Mar;20(3):199-211. doi: 10.1089/cmb.2012.0088. Epub 2013 Feb 19.

10.

Ancestral components of admixed genomes in a Mexican cohort.

Johnson NA, Coram MA, Shriver MD, Romieu I, Barsh GS, London SJ, Tang H.

PLoS Genet. 2011 Dec;7(12):e1002410. doi: 10.1371/journal.pgen.1002410. Epub 2011 Dec 15.

11.

Inferring parental genomic ancestries using pooled semi-Markov processes.

Zou JY, Halperin E, Burchard E, Sankararaman S.

Bioinformatics. 2015 Jun 15;31(12):i190-6. doi: 10.1093/bioinformatics/btv239.

12.

Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations.

Bryc K, Velez C, Karafet T, Moreno-Estrada A, Reynolds A, Auton A, Hammer M, Bustamante CD, Ostrer H.

Proc Natl Acad Sci U S A. 2010 May 11;107 Suppl 2:8954-61. doi: 10.1073/pnas.0914618107. Epub 2010 May 5.

13.

Spatial localization of recent ancestors for admixed individuals.

Yang WY, Platt A, Chiang CW, Eskin E, Novembre J, Pasaniuc B.

G3 (Bethesda). 2014 Nov 3;4(12):2505-18. doi: 10.1534/g3.114.014274.

14.

Patterns of genetic variation in the hypertension candidate gene GRK4: ethnic variation and haplotype structure.

Lohmueller KE, Wong LJ, Mauney MM, Jiang L, Felder RA, Jose PA, Williams SM.

Ann Hum Genet. 2006 Jan;70(Pt 1):27-41.

15.

Genetic variation in Native Americans, inferred from Latino SNP and resequencing data.

Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P.

Mol Biol Evol. 2011 Aug;28(8):2231-7. doi: 10.1093/molbev/msr049. Epub 2011 Mar 2.

16.

MaCH-admix: genotype imputation for admixed populations.

Liu EY, Li M, Wang W, Li Y.

Genet Epidemiol. 2013 Jan;37(1):25-37. doi: 10.1002/gepi.21690. Epub 2012 Oct 16.

17.

RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference.

Maples BK, Gravel S, Kenny EE, Bustamante CD.

Am J Hum Genet. 2013 Aug 8;93(2):278-88. doi: 10.1016/j.ajhg.2013.06.020. Epub 2013 Aug 1.

18.

Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach.

Sohn KA, Ghahramani Z, Xing EP.

Genetics. 2012 Aug;191(4):1295-308. doi: 10.1534/genetics.112.140228. Epub 2012 May 29.

19.

A Continuous Correlated Beta Process Model for Genetic Ancestry in Admixed Populations.

Gompert Z.

PLoS One. 2016 Mar 11;11(3):e0151047. doi: 10.1371/journal.pone.0151047. eCollection 2016.

20.

Ancestry-related assortative mating in Latino populations.

Risch N, Choudhry S, Via M, Basu A, Sebro R, Eng C, Beckman K, Thyne S, Chapela R, Rodriguez-Santana JR, Rodriguez-Cintron W, Avila PC, Ziv E, Gonzalez Burchard E.

Genome Biol. 2009;10(11):R132. doi: 10.1186/gb-2009-10-11-r132. Epub 2009 Nov 20.

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