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Items: 1 to 20 of 145

1.

Tav4SB: integrating tools for analysis of kinetic models of biological systems.

Rybiński M, Lula M, Banasik P, Lasota S, Gambin A.

BMC Syst Biol. 2012 Apr 5;6:25. doi: 10.1186/1752-0509-6-25.

2.

CalcTav--integration of a spreadsheet and Taverna workbench.

Sroka J, Krupa Ł, Kierzek AM, Tyszkiewicz J.

Bioinformatics. 2011 Sep 15;27(18):2618-9. doi: 10.1093/bioinformatics/btr425. Epub 2011 Jul 19.

PMID:
21775305
3.

The Taverna Interaction Service: enabling manual interaction in workflows.

Lanzén A, Oinn T.

Bioinformatics. 2008 Apr 15;24(8):1118-20. doi: 10.1093/bioinformatics/btn082. Epub 2008 Mar 12.

PMID:
18337261
4.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

5.

Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.

Abouelhoda M, Issa SA, Ghanem M.

BMC Bioinformatics. 2012 May 4;13:77. doi: 10.1186/1471-2105-13-77.

6.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

7.

Taverna: a tool for the composition and enactment of bioinformatics workflows.

Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, Li P.

Bioinformatics. 2004 Nov 22;20(17):3045-54. Epub 2004 Jun 16.

PMID:
15201187
8.

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2.

9.

BioMoby extensions to the Taverna workflow management and enactment software.

Kawas E, Senger M, Wilkinson MD.

BMC Bioinformatics. 2006 Nov 30;7:523.

10.

Taverna: a tool for building and running workflows of services.

Hull D, Wolstencroft K, Stevens R, Goble C, Pocock MR, Li P, Oinn T.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W729-32.

11.

BIFI: a Taverna plugin for a simplified and user-friendly workflow platform.

Yildiz A, Dilaveroglu E, Visne I, Günay B, Sefer E, Weinhausel A, Rattay F, Goble CA, Pandey RV, Kriegner A.

BMC Res Notes. 2014 Oct 20;7:740. doi: 10.1186/1756-0500-7-740.

12.

XQTav: an XQuery processor for Taverna environment.

Sroka J, Kaczor G, Tyszkiewicz J, Kierzek AM.

Bioinformatics. 2006 May 15;22(10):1280-1. Epub 2006 Mar 21.

PMID:
16551662
13.

Workflows for microarray data processing in the Kepler environment.

Stropp T, McPhillips T, Ludäscher B, Bieda M.

BMC Bioinformatics. 2012 May 17;13:102. doi: 10.1186/1471-2105-13-102.

14.

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis.

Römer M, Eichner J, Dräger A, Wrzodek C, Wrzodek F, Zell A.

PLoS One. 2016 Feb 16;11(2):e0149263. doi: 10.1371/journal.pone.0149263. eCollection 2016.

15.

MetaNET--a web-accessible interactive platform for biological metabolic network analysis.

Narang P, Khan S, Hemrom AJ; Open Source Drug Discovery Consortium., Lynn AM.

BMC Syst Biol. 2014;8:130. doi: 10.1186/s12918-014-0130-2. Epub 2014 Dec 5.

16.

A web services choreography scenario for interoperating bioinformatics applications.

de Knikker R, Guo Y, Li JL, Kwan AK, Yip KY, Cheung DW, Cheung KH.

BMC Bioinformatics. 2004 Mar 10;5:25.

17.

CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models.

Chen Y, Lawless C, Gillespie CS, Wu J, Boys RJ, Wilkinson DJ.

Brief Bioinform. 2010 May;11(3):278-89. doi: 10.1093/bib/bbp072. Epub 2010 Jan 7.

PMID:
20056731
18.

KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.

Costa RS, Veríssimo A, Vinga S.

BMC Syst Biol. 2014 Aug 13;8:85. doi: 10.1186/s12918-014-0085-3.

19.

ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes.

Mei Y, Carbo A, Hoops S, Hontecillas R, Bassaganya-Riera J.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Mar-Apr;12(2):289-97. doi: 10.1109/TCBB.2014.2351823.

PMID:
26357217
20.

Web services and workflow management for biological resources.

Romano P, Marra D, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S24.

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