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Items: 1 to 20 of 149

1.

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies.

Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, Velasco R, Sargent DJ.

BMC Genomics. 2012 Apr 4;13:129. doi: 10.1186/1471-2164-13-129.

2.

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family.

Illa E, Sargent DJ, Lopez Girona E, Bushakra J, Cestaro A, Crowhurst R, Pindo M, Cabrera A, van der Knaap E, Iezzoni A, Gardiner S, Velasco R, Arús P, Chagné D, Troggio M.

BMC Evol Biol. 2011 Jan 12;11:9. doi: 10.1186/1471-2148-11-9.

3.

Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach.

Bushakra JM, Stephens MJ, Atmadjaja AN, Lewers KS, Symonds VV, Udall JA, Chagné D, Buck EJ, Gardiner SE.

Theor Appl Genet. 2012 Jul;125(2):311-27. doi: 10.1007/s00122-012-1835-5. Epub 2012 Mar 8.

PMID:
22398438
4.

Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry).

Vilanova S, Sargent DJ, Arús P, Monfort A.

BMC Plant Biol. 2008 Jun 18;8:67. doi: 10.1186/1471-2229-8-67.

5.

Genotyping-by-sequencing in an orphan plant species Physocarpus opulifolius helps identify the evolutionary origins of the genus Prunus.

Buti M, Sargent DJ, Mhelembe KG, Delfino P, Tobutt KR, Velasco R.

BMC Res Notes. 2016 May 11;9:268. doi: 10.1186/s13104-016-2069-4.

6.

Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers.

Cabrera A, Kozik A, Howad W, Arus P, Iezzoni AF, van der Knaap E.

BMC Genomics. 2009 Nov 29;10:562. doi: 10.1186/1471-2164-10-562.

7.

Evolution of the Rdr1 TNL-cluster in roses and other Rosaceous species.

Terefe-Ayana D, Kaufmann H, Linde M, Debener T.

BMC Genomics. 2012 Aug 20;13:409. doi: 10.1186/1471-2164-13-409.

8.

Characterization and Comparison of the CPK Gene Family in the Apple (Malus × domestica) and Other Rosaceae Species and Its Response to Alternaria alternata Infection.

Wei M, Wang S, Dong H, Cai B, Tao J.

PLoS One. 2016 May 17;11(5):e0155590. doi: 10.1371/journal.pone.0155590. eCollection 2016.

9.

Multiple models for Rosaceae genomics.

Shulaev V, Korban SS, Sosinski B, Abbott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Arús P, Dandekar AM, Lewers K, Brown SK, Davis TM, Gardiner SE, Potter D, Veilleux RE.

Plant Physiol. 2008 Jul;147(3):985-1003. doi: 10.1104/pp.107.115618. Epub 2008 May 16. Review.

10.

Physical mapping of a pollen modifier locus controlling self-incompatibility in apricot and synteny analysis within the Rosaceae.

Zuriaga E, Molina L, Badenes ML, Romero C.

Plant Mol Biol. 2012 Jun;79(3):229-42. doi: 10.1007/s11103-012-9908-z. Epub 2012 Apr 6.

PMID:
22481163
11.

Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus.

Aguiar B, Vieira J, Cunha AE, Fonseca NA, Iezzoni A, van Nocker S, Vieira CP.

PLoS One. 2015 May 19;10(5):e0126138. doi: 10.1371/journal.pone.0126138. eCollection 2015.

12.

Divergence of the bZIP Gene Family in Strawberry, Peach, and Apple Suggests Multiple Modes of Gene Evolution after Duplication.

Wang XL, Zhong Y, Cheng ZM, Xiong JS.

Int J Genomics. 2015;2015:536943. doi: 10.1155/2015/536943. Epub 2015 Dec 7.

13.

Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication.

Xiang Y, Huang CH, Hu Y, Wen J, Li S, Yi T, Chen H, Xiang J, Ma H.

Mol Biol Evol. 2017 Feb 1;34(2):262-281. doi: 10.1093/molbev/msw242.

14.

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

International Peach Genome Initiative, Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Del Fabbro C, Aramini V, Copetti D, Gonzalez S, Horner DS, Falchi R, Lucas S, Mica E, Maldonado J, Lazzari B, Bielenberg D, Pirona R, Miculan M, Barakat A, Testolin R, Stella A, Tartarini S, Tonutti P, Arús P, Orellana A, Wells C, Main D, Vizzotto G, Silva H, Salamini F, Schmutz J, Morgante M, Rokhsar DS.

Nat Genet. 2013 May;45(5):487-94. doi: 10.1038/ng.2586. Epub 2013 Mar 24.

15.

Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.

Jung S, Main D, Staton M, Cho I, Zhebentyayeva T, Arús P, Abbott A.

BMC Genomics. 2006 Apr 14;7:81.

16.

The genome of Prunus mume.

Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W, Tao Y, Wang J, Yuan Z, Fan G, Xing Z, Han C, Pan H, Zhong X, Shi W, Liang X, Du D, Sun F, Xu Z, Hao R, Lv T, Lv Y, Zheng Z, Sun M, Luo L, Cai M, Gao Y, Wang J, Yin Y, Xu X, Cheng T, Wang J.

Nat Commun. 2012;3:1318. doi: 10.1038/ncomms2290.

17.

Genomic characterization of putative allergen genes in peach/almond and their synteny with apple.

Chen L, Zhang S, Illa E, Song L, Wu S, Howad W, Arús P, van de Weg E, Chen K, Gao Z.

BMC Genomics. 2008 Nov 17;9:543. doi: 10.1186/1471-2164-9-543.

18.

Characterization of resistance gene analogues (RGAs) in apple (Malus × domestica Borkh.) and their evolutionary history of the Rosaceae family.

Perazzolli M, Malacarne G, Baldo A, Righetti L, Bailey A, Fontana P, Velasco R, Malnoy M.

PLoS One. 2014 Feb 5;9(2):e83844. doi: 10.1371/journal.pone.0083844. eCollection 2014.

19.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

20.

Species-specific duplications driving the recent expansion of NBS-LRR genes in five Rosaceae species.

Zhong Y, Yin H, Sargent DJ, Malnoy M, Cheng ZM.

BMC Genomics. 2015 Feb 14;16:77. doi: 10.1186/s12864-015-1291-0.

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