Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 169

1.

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W; Fungal Barcoding Consortium; Fungal Barcoding Consortium Author List.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6. doi: 10.1073/pnas.1117018109. Epub 2012 Mar 27.

2.

Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi.

Kiss L.

Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):E1811; author reply E1812. doi: 10.1073/pnas.1207143109. Epub 2012 Jun 19. No abstract available.

3.

Potential of DNA barcoding for detecting quarantine fungi.

Gao R, Zhang G.

Phytopathology. 2013 Nov;103(11):1103-7. doi: 10.1094/PHYTO-12-12-0321-R.

4.
5.

DNA barcoding of arbuscular mycorrhizal fungi.

Stockinger H, Krüger M, Schüssler A.

New Phytol. 2010 Jul;187(2):461-74. doi: 10.1111/j.1469-8137.2010.03262.x. Epub 2010 Apr 23.

6.

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants.

China Plant BOL Group, Li DZ, Gao LM, Li HT, Wang H, Ge XJ, Liu JQ, Chen ZD, Zhou SL, Chen SL, Yang JB, Fu CX, Zeng CX, Yan HF, Zhu YJ, Sun YS, Chen SY, Zhao L, Wang K, Yang T, Duan GW.

Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19641-6. doi: 10.1073/pnas.1104551108. Epub 2011 Nov 18.

7.

Barcoding the kingdom Plantae: new PCR primers for ITS regions of plants with improved universality and specificity.

Cheng T, Xu C, Lei L, Li C, Zhang Y, Zhou S.

Mol Ecol Resour. 2016 Jan;16(1):138-49. doi: 10.1111/1755-0998.12438. Epub 2015 Jul 3.

PMID:
26084789
8.

Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons.

Clemmensen KE, Ihrmark K, Durling MB, Lindahl BD.

Methods Mol Biol. 2016;1399:61-88. doi: 10.1007/978-1-4939-3369-3_4.

PMID:
26791497
9.

Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies.

Op De Beeck M, Lievens B, Busschaert P, Declerck S, Vangronsveld J, Colpaert JV.

PLoS One. 2014 Jun 16;9(6):e97629. doi: 10.1371/journal.pone.0097629. eCollection 2014.

10.

A new method for species identification via protein-coding and non-coding DNA barcodes by combining machine learning with bioinformatic methods.

Zhang AB, Feng J, Ward RD, Wan P, Gao Q, Wu J, Zhao WZ.

PLoS One. 2012;7(2):e30986. doi: 10.1371/journal.pone.0030986. Epub 2012 Feb 20.

11.

One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes.

Stielow JB, Lévesque CA, Seifert KA, Meyer W, Iriny L, Smits D, Renfurm R, Verkley GJ, Groenewald M, Chaduli D, Lomascolo A, Welti S, Lesage-Meessen L, Favel A, Al-Hatmi AM, Damm U, Yilmaz N, Houbraken J, Lombard L, Quaedvlieg W, Binder M, Vaas LA, Vu D, Yurkov A, Begerow D, Roehl O, Guerreiro M, Fonseca A, Samerpitak K, van Diepeningen AD, Dolatabadi S, Moreno LF, Casaregola S, Mallet S, Jacques N, Roscini L, Egidi E, Bizet C, Garcia-Hermoso D, Martín MP, Deng S, Groenewald JZ, Boekhout T, de Beer ZW, Barnes I, Duong TA, Wingfield MJ, de Hoog GS, Crous PW, Lewis CT, Hambleton S, Moussa TA, Al-Zahrani HS, Almaghrabi OA, Louis-Seize G, Assabgui R, McCormick W, Omer G, Dukik K, Cardinali G, Eberhardt U, de Vries M, Robert V.

Persoonia. 2015 Dec;35:242-63. doi: 10.3767/003158515X689135. Epub 2015 Aug 28.

12.

The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities.

Větrovský T, Kolařík M, Žifčáková L, Zelenka T, Baldrian P.

Mol Ecol Resour. 2016 Mar;16(2):388-401. doi: 10.1111/1755-0998.12456. Epub 2015 Sep 4.

PMID:
26287723
13.

DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus.

Feau N, Vialle A, Allaire M, Maier W, Hamelin RC.

Mycologia. 2011 Nov-Dec;103(6):1250-66. doi: 10.3852/10-426. Epub 2011 Jun 9.

PMID:
21659458
14.

DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context.

Kelly LJ, Hollingsworth PM, Coppins BJ, Ellis CJ, Harrold P, Tosh J, Yahr R.

New Phytol. 2011 Jul;191(1):288-300. doi: 10.1111/j.1469-8137.2011.03677.x. Epub 2011 Mar 22.

15.

Towards a universal barcode of oomycetes--a comparison of the cox1 and cox2 loci.

Choi YJ, Beakes G, Glockling S, Kruse J, Nam B, Nigrelli L, Ploch S, Shin HD, Shivas RG, Telle S, Voglmayr H, Thines M.

Mol Ecol Resour. 2015 Nov;15(6):1275-88. doi: 10.1111/1755-0998.12398. Epub 2015 Mar 24.

PMID:
25728598
16.

DNA barcoding for identification of consumer-relevant mushrooms: A partial solution for product certification?

Raja HA, Baker TR, Little JG, Oberlies NH.

Food Chem. 2017 Jan 1;214:383-92. doi: 10.1016/j.foodchem.2016.07.052. Epub 2016 Jul 9.

17.

Identification of species in the angiosperm family Apiaceae using DNA barcodes.

Liu J, Shi L, Han J, Li G, Lu H, Hou J, Zhou X, Meng F, Downie SR.

Mol Ecol Resour. 2014 Nov;14(6):1231-8. doi: 10.1111/1755-0998.12262. Epub 2014 May 14.

PMID:
24739357
18.

Plunging hands into the mushroom jar: a phylogenetic framework for Lyophyllaceae (Agaricales, Basidiomycota).

Bellanger JM, Moreau PA, Corriol G, Bidaud A, Chalange R, Dudova Z, Richard F.

Genetica. 2015 Apr;143(2):169-94. doi: 10.1007/s10709-015-9823-8. Epub 2015 Feb 5.

PMID:
25652231
19.

Towards a unified paradigm for sequence-based identification of fungi.

Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AF, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM, Douglas B, Drenkhan T, Eberhardt U, Dueñas M, Grebenc T, Griffith GW, Hartmann M, Kirk PM, Kohout P, Larsson E, Lindahl BD, Lücking R, Martín MP, Matheny PB, Nguyen NH, Niskanen T, Oja J, Peay KG, Peintner U, Peterson M, Põldmaa K, Saag L, Saar I, Schüßler A, Scott JA, Senés C, Smith ME, Suija A, Taylor DL, Telleria MT, Weiss M, Larsson KH.

Mol Ecol. 2013 Nov;22(21):5271-7. doi: 10.1111/mec.12481. Epub 2013 Sep 24.

PMID:
24112409
20.

Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms.

Saunders GW, McDevit DC.

Methods Mol Biol. 2012;858:207-22. doi: 10.1007/978-1-61779-591-6_10.

PMID:
22684958

Supplemental Content

Support Center