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Items: 1 to 20 of 67

1.

Inference of modules associated to eQTLs.

Kreimer A, Litvin O, Hao K, Molony C, Pe'er D, Pe'er I.

Nucleic Acids Res. 2012 Jul;40(13):e98. doi: 10.1093/nar/gks269. Epub 2012 Mar 24.

2.

Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs).

Handelman SK, Seweryn M, Smith RM, Hartmann K, Wang D, Pietrzak M, Johnson AD, Kloczkowski A, Sadee W.

BMC Genomics. 2015;16 Suppl 8:S8. doi: 10.1186/1471-2164-16-S8-S8. Epub 2015 Jun 18.

3.

Functional evaluation of genetic variants associated with endometriosis near GREB1.

Fung JN, Holdsworth-Carson SJ, Sapkota Y, Zhao ZZ, Jones L, Girling JE, Paiva P, Healey M, Nyholt DR, Rogers PA, Montgomery GW.

Hum Reprod. 2015 May;30(5):1263-75. doi: 10.1093/humrep/dev051. Epub 2015 Mar 18.

PMID:
25788566
4.

Mapping transcription mechanisms from multimodal genomic data.

Chang HH, McGeachie M, Alterovitz G, Ramoni MF.

BMC Bioinformatics. 2010 Oct 28;11 Suppl 9:S2. doi: 10.1186/1471-2105-11-S9-S2.

5.

Allelic heterogeneity and more detailed analyses of known loci explain additional phenotypic variation and reveal complex patterns of association.

Wood AR, Hernandez DG, Nalls MA, Yaghootkar H, Gibbs JR, Harries LW, Chong S, Moore M, Weedon MN, Guralnik JM, Bandinelli S, Murray A, Ferrucci L, Singleton AB, Melzer D, Frayling TM.

Hum Mol Genet. 2011 Oct 15;20(20):4082-92. doi: 10.1093/hmg/ddr328. Epub 2011 Jul 28.

6.

Identifying regulatory relationships among genomic loci, biological pathways, and disease.

Woo JH, Cho SB, Lee E, Kim JH.

Artif Intell Med. 2010 Jul;49(3):161-5. doi: 10.1016/j.artmed.2010.03.001. Epub 2010 May 31.

PMID:
20554166
7.

Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits.

Li H, Chen H, Bao L, Manly KF, Chesler EJ, Lu L, Wang J, Zhou M, Williams RW, Cui Y.

Hum Mol Genet. 2006 Feb 1;15(3):481-92. Epub 2005 Dec 21.

PMID:
16371421
8.

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL.

BMC Bioinformatics. 2005 Dec 8;6:292.

9.

Expression QTL-based analyses reveal the mechanisms underlying colorectal cancer predisposition.

Zhang J, Jiang K, Shen Z, Gao Z, Lv L, Ye Y, Wang S.

Tumour Biol. 2014 Dec;35(12):12607-11. doi: 10.1007/s13277-014-2583-8. Epub 2014 Sep 10.

PMID:
25201067
10.

Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.

11.

A genome scan for quantitative trait loci influencing carcass, post-natal growth and reproductive traits in commercial Angus cattle.

McClure MC, Morsci NS, Schnabel RD, Kim JW, Yao P, Rolf MM, McKay SD, Gregg SJ, Chapple RH, Northcutt SL, Taylor JF.

Anim Genet. 2010 Dec;41(6):597-607. doi: 10.1111/j.1365-2052.2010.02063.x.

PMID:
20477797
12.

Inferring genetic architecture of complex traits using Bayesian integrative analysis of genome and transcriptome data.

Ehsani A, Sørensen P, Pomp D, Allan M, Janss L.

BMC Genomics. 2012 Sep 5;13:456. doi: 10.1186/1471-2164-13-456.

13.

The evolution of signaling complexity suggests a mechanism for reducing the genomic search space in human association studies.

Irizarry KJ, Merriman B, Bahamonde ME, Wong ML, Licinio J.

Mol Psychiatry. 2005 Jan;10(1):14-26. Review.

PMID:
15618953
14.

Disease-driven detection of differential inherited SNP modules from SNP network.

Li C, Li Y, Xu J, Lv J, Ma Y, Shao T, Gong B, Tan R, Xiao Y, Li X.

Gene. 2011 Dec 10;489(2):119-29. doi: 10.1016/j.gene.2011.08.026. Epub 2011 Sep 2.

PMID:
21920414
15.

New aQTL SNPs for the CYP2D6 identified by a novel mediation analysis of genome-wide SNP arrays, gene expression arrays, and CYP2D6 activity.

Jiang G, Chakraborty A, Wang Z, Boustani M, Liu Y, Skaar T, Li L.

Biomed Res Int. 2013;2013:493019. doi: 10.1155/2013/493019. Epub 2013 Oct 22.

16.

Celiac disease: moving from genetic associations to causal variants.

Hrdlickova B, Westra HJ, Franke L, Wijmenga C.

Clin Genet. 2011 Sep;80(3):203-313. doi: 10.1111/j.1399-0004.2011.01707.x. Epub 2011 Jun 13. Review.

PMID:
21595655
17.

Detecting AIDS restriction genes: from candidate genes to genome-wide association discovery.

Hutcheson HB, Lautenberger JA, Nelson GW, Pontius JU, Kessing BD, Winkler CA, Smith MW, Johnson R, Stephens R, Phair J, Goedert JJ, Donfield S, O'Brien SJ.

Vaccine. 2008 Jun 6;26(24):2951-65. doi: 10.1016/j.vaccine.2007.12.054. Epub 2008 Feb 1.

PMID:
18325640
18.

Genetic variation in putative regulatory loci controlling gene expression in breast cancer.

Kristensen VN, Edvardsen H, Tsalenko A, Nordgard SH, Sørlie T, Sharan R, Vailaya A, Ben-Dor A, Lønning PE, Lien S, Omholt S, Syvänen AC, Yakhini Z, Børresen-Dale AL.

Proc Natl Acad Sci U S A. 2006 May 16;103(20):7735-40. Epub 2006 May 9.

19.

Physiology and Endocrinology Symposium: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females.

Snelling WM, Cushman RA, Fortes MR, Reverter A, Bennett GL, Keele JW, Kuehn LA, McDaneld TG, Thallman RM, Thomas MG.

J Anim Sci. 2012 Apr;90(4):1152-65. doi: 10.2527/jas.2011-4581. Epub 2011 Oct 28.

20.

Catalog of microRNA seed polymorphisms in vertebrates.

Zorc M, Skok DJ, Godnic I, Calin GA, Horvat S, Jiang Z, Dovc P, Kunej T.

PLoS One. 2012;7(1):e30737. doi: 10.1371/journal.pone.0030737. Epub 2012 Jan 27.

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