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Items: 1 to 20 of 100

1.

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.

Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH; North East Bioinformatics Collaborative Curation Team..

Database (Oxford). 2012 Mar 20;2012:bar064. doi: 10.1093/database/bar064. Print 2012.

2.

Promoting synergistic research and education in genomics and bioinformatics.

Yang JY, Yang MQ, Zhu MM, Arabnia HR, Deng Y.

BMC Genomics. 2008;9 Suppl 1:I1. doi: 10.1186/1471-2164-9-S1-I1. Review.

3.

SOBA: sequence ontology bioinformatics analysis.

Moore B, Fan G, Eilbeck K.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W161-4. doi: 10.1093/nar/gkq426. Epub 2010 May 21.

4.

SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes.

Wyffels J, King BL, Vincent J, Chen C, Wu CH, Polson SW.

F1000Res. 2014 Aug 12;3:191. doi: 10.12688/f1000research.4996.1. eCollection 2014.

5.

Long-PCR based next generation sequencing of the whole mitochondrial genome of the peacock skate Pavoraja nitida (Elasmobranchii: Arhynchobatidae).

Yang L, Naylor GJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):943-4. doi: 10.3109/19401736.2014.926497. Epub 2014 Jun 18.

PMID:
24938110
6.

Genome annotation techniques: new approaches and challenges.

Rust AG, Mongin E, Birney E.

Drug Discov Today. 2002 Jun 1;7(11):S70-6. Review.

PMID:
12047883
7.

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.

Reese JT, Childers CP, Sundaram JP, Dickens CM, Childs KL, Vile DC, Elsik CG.

BMC Genomics. 2010 Nov 19;11:645. doi: 10.1186/1471-2164-11-645.

8.

Analysis and functional annotation of expressed sequence tags from in vitro cell lines of elasmobranchs: Spiny dogfish shark (Squalus acanthias) and little skate (Leucoraja erinacea).

Parton A, Bayne CJ, Barnes DW.

Comp Biochem Physiol Part D Genomics Proteomics. 2010 Sep;5(3):199-206. doi: 10.1016/j.cbd.2010.04.004. Epub 2010 Apr 24.

9.

Chado controller: advanced annotation management with a community annotation system.

Guignon V, Droc G, Alaux M, Baurens FC, Garsmeur O, Poiron C, Carver T, Rouard M, Bocs S.

Bioinformatics. 2012 Apr 1;28(7):1054-6. doi: 10.1093/bioinformatics/bts046. Epub 2012 Jan 28.

10.

Gastro-intestinal handling of water and solutes in three species of elasmobranch fish, the white-spotted bamboo shark, Chiloscyllium plagiosum, little skate, Leucoraja erinacea and the clear nose skate Raja eglanteria.

Anderson WG, Dasiewicz PJ, Liban S, Ryan C, Taylor JR, Grosell M, Weihrauch D.

Comp Biochem Physiol A Mol Integr Physiol. 2010 Apr;155(4):493-502. doi: 10.1016/j.cbpa.2009.09.020. Epub 2009 Sep 25.

PMID:
19782760
11.

Gene calling and bacterial genome annotation with BG7.

Tobes R, Pareja-Tobes P, Manrique M, Pareja-Tobes E, Kovach E, Alekhin A, Pareja E.

Methods Mol Biol. 2015;1231:177-89. doi: 10.1007/978-1-4939-1720-4_12.

PMID:
25343866
12.

A primitive ATP receptor from the little skate Raja erinacea.

Dranoff JA, O'Neill AF, Franco AM, Cai SY, Connolly GC, Ballatori N, Boyer JL, Nathanson MH.

J Biol Chem. 2000 Sep 29;275(39):30701-6.

13.

Accelerating in silico research with workflows: a lesson in Simplicity.

Walsh P, Carroll J, Sleator RD.

Comput Biol Med. 2013 Dec;43(12):2028-35. doi: 10.1016/j.compbiomed.2013.09.011. Epub 2013 Sep 25.

PMID:
24290918
14.

Evaluation of next-generation sequencing software in mapping and assembly.

Bao S, Jiang R, Kwan W, Wang B, Ma X, Song YQ.

J Hum Genet. 2011 Jun;56(6):406-14. doi: 10.1038/jhg.2011.43. Epub 2011 Apr 28. Review.

PMID:
21525877
15.

The complete validated mitochondrial genome of the yellownose skate Zearaja chilensis (Guichenot 1848) (Rajiformes, Rajidae).

Vargas-Caro C, Bustamante C, Bennett MB, Ovenden JR.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):1227-8. doi: 10.3109/19401736.2014.945530. Epub 2014 Aug 4.

PMID:
25090390
16.

Scaling up genome annotation using MAKER and work queue.

Thrasher A, Musgrave Z, Kachmarck B, Thain D, Emrich S.

Int J Bioinform Res Appl. 2014;10(4-5):447-60. doi: 10.1504/IJBRA.2014.062994.

PMID:
24989862
17.

AnnoTrack--a tracking system for genome annotation.

Kokocinski F, Harrow J, Hubbard T.

BMC Genomics. 2010 Oct 5;11:538. doi: 10.1186/1471-2164-11-538.

18.

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM.

Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.

PMID:
26059717
20.

Purification, structural characterization, and myotropic activity of a peptide related to des-Arg(9)-bradykinin from an elasmobranch fish, the little skate, Leucoraja erinacea.

Anderson WG, Leprince J, Conlon JM.

Peptides. 2008 Aug;29(8):1280-6. doi: 10.1016/j.peptides.2008.04.006. Epub 2008 Apr 18.

PMID:
18502540

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